LOCUS AK299638 3650 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ61367 complete cds, highly similar to
Protocadherin-11 X-linked precursor.
ACCESSION AK299638
VERSION AK299638.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3650)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3650
/clone="OCBBF2020018"
/clone_lib="OCBBF2"
/db_xref="H-InvDB:HIT000494262"
/db_xref="taxon:9606"
/dev_stage="fetal"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 433..3180
/codon_start=1
/note="highly similar to Protocadherin-11 X-linked
precursor"
/protein_id="BAG61562.1"
/transl_table=1
/translation="MRTERQWVLIQIFQVLCGLIQQTVTSVPGMDLLSGTYIFAVLLA
CVVFHSGAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYKTGDVP
LIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAVLPDEIFRLVKIRFLIED
INDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDV
IETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHP
VFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNTT
TGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVIDVNDNVPSIDIRYIVNP
VNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLETA
AYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENN
SPGIQLTKVSAMDADSGPNAKINYLLGPDAPPEFSLDCRTGMLTVVKKLDREKEDKYL
FTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYNFYVPENLPRHGTVGLITVT
DPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSR
SSSAKVTINVVDVNDNKPVFIVPPSNCSYELVLPSTNPGTVVFQVIAVDNDTGMNAEV
RYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVN
LFVNESVTNATLINELVRKSTEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVV
IFITAVVRCRQAPHLKAAQKNKQNSEWATPNPENRQMIMMKKKKKKKKATCARAAGRG
R"
BASE COUNT 1103 a 811 c 811 g 925 t
ORIGIN
1 gcagtcggcg aactgtcggg gcgggaggag ccgcgagcag tagctgcact cagctgcccg
61 cgcggcaaag aggaaggcaa gccaaacaga gtgcgcagag tggcagtgcc agcggcgaca
121 caggcagcac aggcagcccg ggctgcctga atagcctcag aaacaacctc agcgactccg
181 gctgctctgc ggactgcgag ctgtggcggt agagcccgct acagcagtcg cagtctccgt
241 ggagcgggcg gaagcctttt ttctcccttt cgtttacctc ttcattctac tctaaaggca
301 tcgttattag gaaaatcctg ttgcgaataa gaaggattcc acagatcaca taccggagag
361 gttttgcctc agctgctctc aactttgtaa tcttgtgaag aagctgacaa gcttggctga
421 ttgcagagca ctatgaggac tgaacgacag tgggttttaa ttcagatatt tcaagtgttg
481 tgcgggttaa tacaacaaac tgtaacaagt gtacctggta tggacttgtt gtccgggacg
541 tacattttcg cggtcctgct agcatgcgtg gtgttccact ctggcgccca ggagaaaaac
601 tacaccatcc gagaagaaat gccagaaaac gtcctgatag gcgacttgtt gaaagacctt
661 aacttgtcgc tgattccaaa caagtccttg acaactgcta tgcagttcaa gctagtgtac
721 aagaccggag atgtgccact gattcgaatt gaagaggata ctggtgagat cttcactact
781 ggcgctcgca ttgatcgtga gaaattatgt gctggtatcc caagggatga gcattgcttt
841 tatgaagtgg aggttgccgt tttgccggat gaaatattta gactggttaa gatacgtttt
901 ctgatagaag atataaatga taatgcacca ttgttcccag caacagttat caacatatca
961 attccagaga actcggctat aaactctaaa tatactctcc cagcggctgt tgatcctgac
1021 gtaggaataa acggagttca aaactacgaa ctaattaaga gtcaaaacat ttttggcctc
1081 gatgtcattg aaacaccaga aggagacaag atgccacaac tgattgttca aaaggagtta
1141 gatagggaag agaaggatac ctacgtgatg aaagtaaagg ttgaagatgg tggctttcct
1201 caaagatcca gtactgctat tttgcaagtg agtgttactg atacaaatga caaccaccca
1261 gtctttaagg agacagagat tgaagtcagt ataccagaaa atgctcctgt aggcacttca
1321 gtgacacagc tccatgccac agatgctgac ataggtgaaa atgccaagat ccacttctct
1381 ttcagcaatc tagtctccaa cattgccagg agattatttc acctcaatac caccactgga
1441 cttatcacaa tcaaagaacc actggatagg gaagaaacac caaaccacaa gttactggtt
1501 ttggcaagtg atggtggatt gatgccagca agagcaatgg tgctggtaaa tgttatagat
1561 gtcaatgata atgtcccatc cattgacata agatacatcg tcaatcctgt caatgacaca
1621 gttgttcttt cagaaaatat tccactcaac accaaaattg ctctcataac tgtgacggat
1681 aaggatgcgg accataatgg cagggtgaca tgcttcacag atcatgaaat ccctttcaga
1741 ttaaggccag tattcagtaa tcagttcctc ctggagactg cagcatatct tgactatgag
1801 tccacaaaag aatatgccat taaattactg gctgcagatg ctggcaaacc tcctttgaat
1861 cagtcagcaa tgctcttcat caaagtgaaa gatgaaaatg acaatgctcc agttttcacc
1921 cagtctttcg taactgtttc tattcctgag aataactctc ctggcatcca gttgacgaaa
1981 gtaagtgcaa tggatgcaga cagtgggcct aatgctaaga tcaattacct gctaggccct
2041 gatgctccac ctgaattcag cctggattgt cgtacaggta tgctgactgt agtgaagaaa
2101 ctagatagag aaaaagagga taaatattta ttcacaattc tggcaaaaga taacggggta
2161 ccacccttaa ccagcaatgt cacagtcttt gtaagcatta ttgatcagaa tgacaatagc
2221 ccagttttca ctcacaatga atacaacttc tatgtcccag aaaaccttcc aaggcatggt
2281 acagtaggac taatcactgt aactgatcct gattatggag acaattctgc agttacgctc
2341 tccattttag atgagaatga tgacttcacc attgattcac aaactggtgt catccgacca
2401 aatatttcat ttgatagaga aaaacaagaa tcttacactt tctatgtaaa ggctgaggat
2461 ggtggtagag tatcacgttc ttcaagtgcc aaagtaacca taaatgtggt tgatgtcaat
2521 gacaacaaac cagttttcat tgtccctcct tccaactgtt cttatgaatt ggttctaccg
2581 tccactaatc caggcacagt ggtctttcag gtaattgctg ttgacaatga cactggcatg
2641 aatgcagagg ttcgttacag cattgtagga ggaaacacaa gagatctgtt tgcaatcgac
2701 caagaaacag gcaacataac attgatggag aaatgtgatg ttacagacct tggtttacac
2761 agagtgttgg tcaaagctaa tgacttagga cagcctgatt ctctcttcag tgttgtaatt
2821 gtcaatctgt tcgtgaatga gtcggtgacc aatgctacac tgattaatga actggtgcgc
2881 aaaagcactg aagcaccagt gaccccaaat actgagatag ctgatgtatc ctcaccaact
2941 agtgactatg tcaagatcct ggttgcagct gttgctggca ccataactgt cgttgtagtt
3001 attttcatca ctgctgtagt aagatgtcgc caggcaccac accttaaggc tgctcagaaa
3061 aacaagcaga attctgaatg ggctacccca aacccagaaa acaggcagat gataatgatg
3121 aaaaaaaaaa aaaaaaaaaa aaaggccaca tgtgctcgag ctgcaggtcg cggccgctag
3181 actagtctag agaaaaaacc tcccacacct ccccctgaac ctgaaacata aaatgaatgc
3241 aattgttgtt gttaacttgt ttattgcagc ttataatggt tacaaataaa gcaatagcat
3301 cacaaatttc acaaataaag catttttttc actgcattct agttgtggtt tgtccaaact
3361 catcaatgta tcttatcatg tctggatccc cgggtaccga gctcgaatta attcctcttc
3421 cgcttcctcg ctcactgact cgctgcgctc ggtcgttcgg ctgcggcgag cggtatcagc
3481 tcactcaaag gcggtaatac ggttatccac agaatcaggg gataacgcag gaaagaacat
3541 gtgagcaaaa ggccagcaaa aggccaggaa ccgtaaaaag gccgcgttgc tggcgttttt
3601 ccataggctc cgcccccctg acgagcatca caaaaatcga cgctcaagtc
//