LOCUS AK299607 1816 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ55780 complete cds, highly similar to
Transcription factor SOX-5.
ACCESSION AK299607
VERSION AK299607.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1816)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1816
/clone="OCBBF2016645"
/clone_lib="OCBBF2"
/db_xref="H-InvDB:HIT000494231"
/db_xref="taxon:9606"
/dev_stage="fetal"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 45..1574
/codon_start=1
/note="highly similar to Transcription factor SOX-5"
/protein_id="BAH13079.1"
/transl_table=1
/translation="MSVMSSKRPASPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPL
HVSFPNKPHSEEFQPVSLLTQETCGHRTPTSQHNTMEVDGNKVMSSFAPHNSSTSPQK
AEEGGRQSGESLSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLS
KDWKDKLLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQPLAAHDEQKKLAA
SQIEKQRQQMELAKQQQEQIARQQQQLLQQQHKINLLQQQIQVQGQLPPLMIPVFPPD
QRTLAAAAQQGFLLPPGFSYKAGCSDPYPVQLIPTTMAAAAAATPGLGPLQLQQLYAA
QLAAMQVSPGGKLPGIPQGNLGAAVSPTSIHTDKSTNSPPPKSKDEVAQPLNLSAKPK
TSDGKSPTSPTSPHMPALRINSGAGPLKASVPAALASPSARVSTIGYLNDHDAVTKAI
QEARQMKEQLRREQQVLDGKVAVVNSLGLNNCRTEKEVLESQSQEFIGNPEGVVAMNP
T"
BASE COUNT 535 a 490 c 445 g 346 t
ORIGIN
1 gaccagatgc tgcggtgcac ggggcagcca ccatctctgc atgcatgtct gtgatgtctt
61 ccaagcgacc agcctctccg tatggggaag cagatggaga ggtagccatg gtgacaagca
121 gacagaaagt ggaagaagag gagagtgacg ggctcccagc ctttcacctt cccttgcatg
181 tgagttttcc caacaagcct cactctgagg aatttcagcc agtttctctg ctgacgcaag
241 agacttgtgg ccataggact cccacttctc agcacaatac aatggaagtt gatggcaata
301 aagttatgtc ttcatttgcc ccacacaact catctacctc acctcagaag gcagaagaag
361 gtgggcgaca gagtggcgag tccttgtcta gtacagccct gggaactcct gaacggcgca
421 agggcagttt agctgatgtt gttgacacct tgaagcagag gaaaatggaa gagctcatca
481 aaaacgagcc ggaagaaacc cccagtattg aaaaactact ctcaaaggac tggaaagaca
541 agcttcttgc aatgggatcg gggaactttg gcgaaataaa agggactccc gagagcttag
601 ctgagaaaga aaggcaactc atgggtatga tcaaccagct gaccagcctc cgagagcagc
661 cgttggctgc ccacgatgag cagaagaaac tagctgcctc tcagattgag aaacagcgtc
721 agcaaatgga gctggccaag cagcaacaag aacaaattgc aagacagcag cagcagcttc
781 tacagcaaca acacaaaatc aatttgctcc agcaacagat ccaggttcaa ggtcagctgc
841 cgccattaat gattcccgta ttccctcctg atcaacggac actggctgca gctgcccagc
901 aaggattcct cctccctcca ggcttcagct ataaggctgg atgtagtgac ccttaccctg
961 ttcagctgat cccaactacc atggcagctg ctgccgcagc aacaccaggc ttaggcccac
1021 tccaactgca gcagttatat gctgcccagc tagctgcaat gcaggtatct ccaggaggga
1081 agctgccagg cataccccaa ggcaaccttg gtgctgctgt atctcctacc agcattcaca
1141 cagacaagag cacaaacagc ccaccaccca aaagcaagga tgaagtggca cagccactga
1201 acctatcagc taaacccaag acctctgatg gcaaatcacc cacatcaccc acctctcccc
1261 atatgccagc tctgagaata aacagtgggg caggccccct caaagcctct gtcccagcag
1321 cgttagctag tccttcagcc agagttagca caataggtta cttaaatgac catgatgctg
1381 tcaccaaggc aatccaagaa gctcggcaaa tgaaggagca actccgacgg gaacaacagg
1441 tgcttgatgg gaaggtggct gttgtgaata gtctgggtct caataactgc cgaacagaaa
1501 aggaagtgct ggagtctcag agtcaagaat ttatagggaa tcccgagggc gtggtagcaa
1561 tgaaccccac ataaagcgtc caatgaatgc cttcatggtg tgggctaaag atgaacggag
1621 aaagatcctt caagcctttc ctgacatgca caactccaac atcagcaaga tattgggatc
1681 tcgctggaaa gctatgacaa acctagagaa acagccatat tatgaggagc aagcccgtct
1741 cagcaagcag cacctggaga agtaccctga ctataagtac aagcccaggc caaagcgcac
1801 ctgcctggtg gatggc
//