LOCUS AK299551 3066 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ59406 complete cds, highly similar to
Hypoxia-inducible factor 1 alpha.
ACCESSION AK299551
VERSION AK299551.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3066)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3066
/clone="OCBBF2009118"
/clone_lib="OCBBF2"
/db_xref="H-InvDB:HIT000494175"
/db_xref="taxon:9606"
/dev_stage="fetal"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 284..2587
/codon_start=1
/note="highly similar to Hypoxia-inducible factor 1 alpha"
/protein_id="BAG61496.1"
/transl_table=1
/translation="MRLTISYLRVRKLLDAGDLDIEDDMKAQMNCFYLKALDGFVMVL
TDDGDMIYISDNVNKYMGLTQFELTGHSVFDFTHPCDHEEMREMLTHRNGLVKKGKEQ
NTQRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTC
LVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYE
YYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCI
VCVNYVVNGIIQHDLIFSLQQTECVLKPVESSDMKMTQLFTKVESEDTSSLFDKLKKE
PDALTLLAPAAGDTIISLGFGSNDTETDDQQLEEVPLYNDVMLPSPNEKLQNINLAMS
PLPTAETPKPLRSSADPALNQEVALKLEPNPESLELSFTMPQIQDQTPSPSDGSTRQS
SPEPNSPSEYCFYVDSDMVNEFKLELVEKLFAEDTEAKNPFSTQDTDLDLEMLAPYIP
MDDDFQLRSFDQLSPLESSSASPESASPQSTVTVFQQTQIQEPTANATTTTATTDELK
TVTKDRMEDIKILIASPSPTHIHKETTSATSSPYRDTQSRTASPNRAGKGVIEQTEKS
HPRSPNVLSVALSQRTTVPEEELNPKILALQNAQRKRKMEHDGSLFQAVGIGTLLQQP
DDHAATTSLSWKRVKGCKSSEQNGMEQKTIILIPSDLACRLLGQSMDESGLPQLTSYD
CEVNAPIQGSRNLLQGEELLRALDQVN"
BASE COUNT 976 a 633 c 598 g 859 t
ORIGIN
1 acagtgctgc ctcgtctgag gggacaggag gatcaccctc ttcgtcgctt cggccagtgt
61 gtcgggctgg gccctgacaa gccacctgag gagaggctcg gagccgggcc cggaccccgg
121 cggcgcgaac gacaagaaaa agataagttc tgaacgtcga aaagaaaagt ctcgagatac
181 agccagatct cggcgaagta aagaatctga agttttttat gagcttgctc atcagttgcc
241 acttccacat aatgtgagtt cgcatcttga taaggcctct gtgatgaggc ttaccatcag
301 ctatttgcgt gtgaggaaac ttctggatgc tggtgatttg gatattgaag atgacatgaa
361 agcacagatg aattgctttt atttgaaagc cttggatggt tttgttatgg ttctcacaga
421 tgatggtgac atgatttaca tttctgataa tgtgaacaaa tacatgggat taactcagtt
481 tgaactaact ggacacagtg tgtttgattt tactcatcca tgtgaccatg aggaaatgag
541 agaaatgctt acacacagaa atggccttgt gaaaaagggt aaagaacaaa acacacagcg
601 aagctttttt ctcagaatga agtgtaccct aactagccga ggaagaacta tgaacataaa
661 gtctgcaaca tggaaggtat tgcactgcac aggccacatt cacgtatatg ataccaacag
721 taaccaacct cagtgtgggt ataagaaacc acctatgacc tgcttggtgc tgatttgtga
781 acccattcct cacccatcaa atattgaaat tcctttagat agcaagactt tcctcagtcg
841 acacagcctg gatatgaaat tttcttattg tgatgaaaga attaccgaat tgatgggata
901 tgagccagaa gaacttttag gccgctcaat ttatgaatat tatcatgctt tggactctga
961 tcatctgacc aaaactcatc atgatatgtt tactaaagga caagtcacca caggacagta
1021 caggatgctt gccaaaagag gtggatatgt ctgggttgaa actcaagcaa ctgtcatata
1081 taacaccaag aattctcaac cacagtgcat tgtatgtgtg aattacgttg tgaatggtat
1141 tattcagcac gacttgattt tctcccttca acaaacagaa tgtgtcctta aaccggttga
1201 atcttcagat atgaaaatga ctcagctatt caccaaagtt gaatcagaag atacaagtag
1261 cctctttgac aaacttaaga aggaacctga tgctttaact ttgctggccc cagccgctgg
1321 agacacaatc atatctttag gttttggcag caacgacaca gaaactgatg accagcaact
1381 tgaggaagta ccattatata atgatgtaat gctcccctca cccaacgaaa aattacagaa
1441 tataaatttg gcaatgtctc cattacccac cgctgaaacg ccaaagccac ttcgaagtag
1501 tgctgaccct gcactcaatc aagaagttgc attaaaatta gaaccaaatc cagagtcact
1561 ggaactttct tttaccatgc cccagattca ggatcagaca cctagtcctt ccgatggaag
1621 cactagacaa agttcacctg agcctaatag tcccagtgaa tattgttttt atgtggatag
1681 tgatatggtc aatgaattca agttggaatt ggtagaaaaa ctttttgctg aagacacaga
1741 agcaaagaac ccattttcta ctcaggacac agatttagac ttggagatgt tagctcccta
1801 tatcccaatg gatgatgact tccagttacg ttccttcgat cagttgtcac cattagaaag
1861 cagttccgca agccctgaaa gcgcaagtcc tcaaagcaca gttacagtat tccagcagac
1921 tcaaatacaa gaacctactg ctaatgccac cactaccact gccaccactg atgaattaaa
1981 aacagtgaca aaagaccgta tggaagacat taaaatattg attgcatctc catctcccac
2041 ccacatacat aaagaaacta ctagtgccac atcatcacca tatagagata ctcaaagtcg
2101 gacagcctca ccaaacagag caggaaaagg agtcatagaa cagacagaaa aatctcatcc
2161 aagaagccct aacgtgttat ctgtcgcttt gagtcaaaga actacagttc ctgaggaaga
2221 actaaatcca aagatactag ctttgcagaa tgctcagaga aagcgaaaaa tggaacatga
2281 tggttcactt tttcaagcag taggaattgg aacattatta cagcagccag acgatcatgc
2341 agctactaca tcactttctt ggaaacgtgt aaaaggatgc aaatctagtg aacagaatgg
2401 aatggagcaa aagacaatta ttttaatacc ctctgattta gcatgtagac tgctggggca
2461 atcaatggat gaaagtggat taccacagct gaccagttat gattgtgaag ttaatgctcc
2521 tatacaaggc agcagaaacc tactgcaggg tgaagaatta ctcagagctt tggatcaagt
2581 taactgagct ttttcttaat ttcattcctt tttttggaca ctggtggctc actacctaaa
2641 gcagtctatt tatattttct acatctaatt ttagaagcct ggctacaata ctgcacaaac
2701 ttggttagtt caatttttga tcccctttct acttaattta cattaatgct cttttttagt
2761 atgttcttta atgctggatc acagacagct cattttctca gttttttggt atttaaacca
2821 ttgcattgca gtagcatcat tttaaaaaat gcaccttttt atttatttat ttttggctag
2881 ggagtttatc cctttttcga attattttta agaagatgcc aatataattt ttgtaagaag
2941 gcagtaacct ttcatcatga tcataggcag ttgaaaaatt tttacacctt ttttttcaca
3001 ttttacataa ataataatgc tttgccagca gtacgtggta gccacaattg cacaatatat
3061 tttctt
//