LOCUS AK299537 2168 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ58256 complete cds, highly similar to Pogo
transposable element with KRAB domain.
ACCESSION AK299537
VERSION AK299537.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2168)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2168
/clone="OCBBF2007961"
/clone_lib="OCBBF2"
/db_xref="H-InvDB:HIT000494161"
/db_xref="taxon:9606"
/dev_stage="fetal"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 292..1866
/codon_start=1
/note="highly similar to Pogo transposable element with
KRAB domain"
/protein_id="BAG61484.1"
/transl_table=1
/translation="MEFPFPKPDMITRLEGEEESQNSDEWQLQGGTSAENEESDVKPP
DWPNPMNATSQFPQPQHFDSFGLRLPRDITELPEWSEGYPFYMAMGFPGYDLSADDIA
GKFQFSRGMRRSYDAGFKLMVVEYAESTNNCQAAKQFGVLEKNVRDWRKVKPQLQNAH
AMRRAFRGPKNGRFALVDQRVAEYVRYMQAKGDPITREAMQLKALEIAQEMNIPEKGF
KASLGWCRRMMRRYDLSLRHKVPVPQHLPEDLTEKLVTYQRSVLALRRAHDYEVAQMG
NADETPICLEVPSRVTVDNQGEKPVLVKTPGREKLKITAMLGVLADGRKLPPYIILRG
TYIPPGKFPSGMEIRCHRYGWMTEDLMQDWLEVVWRRRTGAVPKQRGMLILNGFRGHA
TDSVKNSMESMNTDMVIIPGGLTSQLQVLDVVVYKPLNDSVRAQYSNWLLAGNLALSP
TGNAKKPPLGLFLEWVMVAWNSISSESIVQGFKKCHISSNLEEEDDVLWEIESELPGG
GEPPKDCDTESMAESN"
BASE COUNT 538 a 560 c 651 g 419 t
ORIGIN
1 agctccgggc cggaccctcc ctcctcccac cacgtgtcct ccccgctccc tcccgagggg
61 ccgcgcgcac gggaggacgg agaggcggaa aggatggcgc tgtgacagcc gggccggagc
121 cctcgcgtcc ccaccccgcg ccctggccgc tgggcccggc gagatggagt ccacagccta
181 ccctctcaat ttgagcctga aagaagagga agaggaagaa gagattcaga gccgggaact
241 agaggacggc ccggcagaca tgcagaaagt acgaatctgc tctgagggcg gatggaattc
301 ccattcccta agccagacat gatcacccgt ttggaagggg aggaggagtc tcagaattct
361 gacgagtggc agctccaagg aggcacctct gcagaaaatg aagaatctga cgtaaagcct
421 ccagactggc caaacccaat gaatgctacc tcccagtttc ctcagcctca gcactttgac
481 agctttggcc tccgtctgcc tcgggatatc acagagctgc ccgagtggag tgaggggtac
541 cccttctaca tggccatggg cttcccaggg tatgacctct cggctgatga catagctggg
601 aagtttcagt tcagccgggg catgcgccgc agttacgacg cagggttcaa gctgatggta
661 gtggaatatg ctgagagtac caacaactgc caggctgcca agcagtttgg agtattggaa
721 aaaaacgttc gagactggcg caaagtgaag ccacagcttc aaaacgccca cgccatgcgg
781 cgggcattcc gaggccccaa gaatgggagg tttgctctgg tggaccagcg tgtggccgaa
841 tatgtcagat acatgcaggc caaaggggac cccatcaccc gggaggcgat gcagctgaaa
901 gctctcgaaa tcgcccagga aatgaacatt ccagagaaag ggttcaaggc aagcttgggt
961 tggtgtcgaa gaatgatgag aaggtatgac ctgtctctga ggcataaagt gcccgtgccc
1021 cagcacctgc cggaagacct gactgagaaa ctcgtcactt accagcgcag tgtcctggct
1081 ctgcgcaggg cgcatgacta tgaggtagct cagatgggga atgcagatga gacgcccatt
1141 tgtttagagg tgccatcacg ggtaactgtt gataaccagg gcgaaaagcc tgtcttggtc
1201 aagacaccag gcagggaaaa actgaaaatc acagcaatgc ttggtgtctt ggctgatggg
1261 aggaagttac caccgtacat cattttgagg ggaacatata tccccccggg gaagtttccc
1321 agtgggatgg aaattcgctg ccaccggtat gggtggatga ctgaagactt gatgcaggac
1381 tggttggaag tggtgtggag acggaggaca ggagcagtgc ccaagcagcg agggatgctg
1441 atcttgaatg gcttccgggg ccatgccaca gattccgtga agaactccat ggaaagcatg
1501 aacactgaca tggtgatcat cccagggggt ctgacctcac agcttcaggt gctggatgtc
1561 gtggtctaca agccactgaa tgacagtgtg cgggcccagt actccaactg gcttctggct
1621 gggaacctgg cgctgagccc aaccgggaat gctaagaagc cacccctggg cctctttctg
1681 gagtgggtca tggtcgcgtg gaatagcatc tcaagtgagt ccatcgtcca agggttcaag
1741 aagtgccata tctccagcaa cttggaggag gaagacgatg tcctgtggga aatcgagagt
1801 gagttgccag gaggaggaga accaccaaaa gattgtgaca ccgaaagcat ggctgagagc
1861 aactgaaggg aaagggaaag gtaaccactc aggagtagat actcagtgcc tttgctgaca
1921 tgtctgtgtt ctacaaacac cttctctcca ttatttttct gtttttaagt tcccttagag
1981 cctacagtgc agtagtgtag atcaggggtc cccaaccccc aggtcacgga ccatactggt
2041 ccatggcctg tcaggaactg ggctgcacag caggaggtga gcggcaggtg agcaagcatt
2101 accacctgag ctccgcccgc tgtcacagca gcggcattag attctcatag gagcacaaac
2161 cctgttgt
//