LOCUS AK299478 1980 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ54379 complete cds, highly similar to
Keratin, type II cytoskeletal 6E.
ACCESSION AK299478
VERSION AK299478.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1980)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1980
/clone="NTONG2009569"
/clone_lib="NTONG2"
/db_xref="H-InvDB:HIT000494102"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="tongue"
CDS 104..1747
/codon_start=1
/note="highly similar to Keratin, type II cytoskeletal 6E"
/protein_id="BAG61442.1"
/transl_table=1
/translation="MASTSTTIRSHSSSRRGFSANSARLPGVSRSGFSSISVSRSRGS
GGLGGACGGAGFGSRSLYGLGGSKRISIGGGSCAISGGYGSRAGGSYGFGGAGSGFGL
GGFGGPGFPVCPPGGIQEVTVNQSLLTPLNLQIDPAIQRVRAEEREQIKTLNNKFASF
IDKVQFLEQQNKVLDTKWTLLQEQGTKTVRQNLEPLFEQYINNLRRQLDSIVGERGRL
DSELRNMQDLVEDLKNKYEDEVNKRTAAENEFVTLKKDVDAAYMNKVELQAKADTLTD
EINFLRALYDAELSQMQTHISDTSVVLSMDNNRNLDLDSIIAEVKAQYEEIAQRSRAE
AESWYQTKYEELQVTAGRHGDDLRNTKQEIAEINRMIQRLRSEIDHVKKQCASLQAAI
ADAEQRGEMALKDAKNKLEGLEDALQKAKQDLARLLKEYQELMNVKLALDVEIATYRK
LLEGEECRLNGEGVGQVNVSVVQSTISSGYGGASGVGSGLGLGGGSSYSYGSGLGIGG
GFSSSSGRAIGGGLSSVGGGSSTIKYTTTSSSSRKSYKH"
BASE COUNT 444 a 563 c 586 g 387 t
ORIGIN
1 ataatatata agctactgct ggagcccgat tccttgtcct gcttctcctg cctctcgcct
61 ccagcctcca acgctcgcca cagccctctc atctcctgga accatggcca gcacatccac
121 caccatcagg agccacagca gcagccgccg gggtttcagt gccaactcag ccaggctccc
181 tggggtcagc cgctctggct tcagcagcat ctccgtgtcc cgctccaggg gcagtggtgg
241 cctgggtggt gcatgtggag gagctggctt tggcagccgc agtctgtatg gcctgggggg
301 ctccaagagg atctccattg gagggggcag ctgtgccatc agtggcggct atggcagcag
361 agccggaggc agctatggct ttggtggcgc cgggagtgga tttggtctgg gtggctttgg
421 gggccctggc ttccctgtgt gcccccctgg aggcatccaa gaggtcaccg tcaaccagag
481 tctcctgact cccctcaacc tgcaaattga ccccgccatc cagcgggtgc gggccgagga
541 gcgtgagcag atcaagaccc tcaacaacaa gtttgcctcc ttcatcgaca aggtgcagtt
601 cctagagcag cagaacaagg ttctggacac caagtggacc ctgctgcagg agcagggcac
661 caagactgtg aggcagaacc tggagccgtt gttcgagcag tacatcaaca acctcaggag
721 gcagctggac agcatcgtcg gggaacgggg ccgcctggac tcggagctga gaaacatgca
781 ggacctggtg gaggacctca agaacaaata tgaggatgaa gtcaacaagc gcacagcagc
841 agagaatgaa tttgtgactc tgaagaagga tgtggatgct gcctacatga acaaggttga
901 actgcaagcc aaggcagaca ctctcacaga tgagatcaac ttcctgagag ccttgtatga
961 tgcagagctg tcccagatgc agacccacat ctcagacaca tccgtggtgc tatccatgga
1021 caacaaccgc aacctggacc tggacagcat catcgctgag gtcaaggccc aatacgagga
1081 gattgctcag aggagccggg ctgaggctga gtcctggtac cagaccaagt acgaggagct
1141 gcaggtcaca gcaggcagac atggggacga cctgcgcaac accaagcagg agattgctga
1201 gatcaaccgc atgatccaga ggctgagatc tgagatcgac catgtcaaga agcagtgtgc
1261 cagcctgcag gctgccattg ctgatgctga gcagcgtggg gagatggcac tcaaggatgc
1321 taagaacaag ctggaagggc tggaggatgc cctgcagaag gccaagcagg acctggcccg
1381 gctgctgaag gagtaccagg agctgatgaa tgtcaagctg gccctggatg tggagatcgc
1441 cacctaccgc aagctgctgg agggcgagga gtgcaggctg aatggcgaag gcgttggaca
1501 agtcaacgtc tctgtagtac agtccaccat ctccagtggc tatggcggtg ccagcggtgt
1561 cggcagtggc ttaggcctgg gtggaggaag cagctactcc tatggcagtg gtcttggcat
1621 tggaggtggc ttcagttcca gcagtggcag agccattggg ggtggcctca gctctgttgg
1681 aggcggcagt tccaccatca agtacaccac cacctcctcc tccagcagga agagctacaa
1741 gcactaaagt gctgcctcca gctctcggtc ccacagtcct caggcccttc tctggctgca
1801 gagccgtctc ctcaggttgc ctatcctctc ctggcctcta gtcttccctg ctctccgagg
1861 tagagctggg tatggatgct tagtgccctc acttctctct gtctatacct gccccatctg
1921 agcacccatt gctcaccatc agatcaacct ttgattttac atcataatgt attcaccaat
//