LOCUS AK299348 3069 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ56907 complete cds, highly similar to Homo
sapiens hydrocephalus inducing (HYDIN), mRNA.
ACCESSION AK299348
VERSION AK299348.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3069)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3069
/cell_line="NT2"
/cell_type="teratocarcinoma"
/clone="NT2RP8006683"
/clone_lib="NT2RP8"
/db_xref="H-InvDB:HIT000493972"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="mRNA from NT2 neuronal precursor cells after
5-weeks retinoic acid (RA) induction."
/organism="Homo sapiens"
CDS 36..2888
/codon_start=1
/note="highly similar to Homo sapiens hydrocephalus
inducing (HYDIN), mRNA"
/protein_id="BAG61346.1"
/transl_table=1
/translation="MESAGGFKLGMEPLSGGGVCEKKKLLKMTSRRLEESMGAVQMGL
VNMFKGFQSKVLPPLSPKVVTEEEVNRMLTPSEFLKEMSLTTEQRLAKTRLMCRPQII
ELLDMGETTHQKFSGIDLDQALFQPFPSEIIFQNYTPCEVYEVPLILRNNDKIPRLVK
VVEESSPYFKVISPKDIGHKVAPGVPSIFRILFTPEENKDYAHTLTCVTEREKFIVPI
KARGARAILDFPDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCRPFSIEPAIGT
LNVGESMQLEVEFEPQSVGDHSGRLIVCYDTGEKVFVSLYGAAIDMNIRLDKNSLTIE
KTYISLANQRTITIHNRSNIIAHFLWKVFATQQEEDREKYRACDDLIKEEKDETDEFF
EECITDPLLREHLSVLSRTFANQRRLVQGDSKLFFNNVFTVEPLEGDVWPNSSAEITV
YFNPLEAKLYQQTIYCDILGREIRLPLRIKGEGMGPKIHFNFELLDIGKVFTGSAHCY
EAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSTILGNFEE
EFLVNVNGSPEPVKLTIRGCVIGPTFHFNVPALHFGDVSFGFPHTLICSLNNTSLIPM
TYKLRIPGDGLGHKSISYCEQHVDYKRPSWTKEEISSMKPKEFTISPDCGTIRPQGFA
AIRVTLCSNTVQKYELALVVDVEGIGEEVLALLITARCVVPALHLVNTEVDFGHCFLK
YPYEKTLQLANQDDLPGFYEVQPQVCEEVPTVLFSSPTPSGVISPSSTIHIPLVLETQ
VTGEHRSTVYISIFGSQDPPLVCHLKSAGEGPVIYVHPNQVDFGNIYVLKDSSRILNL
CNQSFIPAFFQAHMAHKKSLWTIEPNEGMVPPETDVQLALTANLNDTLTFKDCVILDI
ENSSTYRIPVQASGTGSTIVSDKPFAPELNLGAHFR"
BASE COUNT 855 a 742 c 683 g 789 t
ORIGIN
1 accgtggcaa cggacggcaa cagctcgggc ggcgcatgga gagtgcgggc ggcttcaagc
61 tgggcatgga gcccctcagc ggcggcgggg tctgtgagaa aaaaaaatta ctaaaaatga
121 caagtagaag acttgaggag tccatggggg ctgttcagat gggattggtc aatatgttca
181 aaggatttca aagcaaggtt ttgccacccc tgagtccaaa ggtggttaca gaagaagaag
241 taaaccgaat gcttacaccc tcagagttcc tgaaggaaat gtccctgacc accgagcaga
301 gactggcaaa aacacgtttg atgtgccgac cacagatcat cgaactctta gatatggggg
361 aaacaacaca tcagaagttt tcaggaattg acctagatca ggcattattc cagccctttc
421 catcagaaat tatatttcag aactacactc cctgtgaagt ctatgaagtt ccactgattt
481 tgaggaacaa tgacaaaatt ccaaggttgg tgaaagttgt ggaagaaagt tcgccttact
541 ttaaagtaat cagccccaaa gatattggcc acaaagtggc tcctggagtg ccttccatat
601 tccgaatcct ctttactcca gaggagaaca aggattacgc ccatacgttg acctgtgtta
661 ctgaaagaga aaagtttatt gtacccatca aagctagagg ggcacgagcc attctcgatt
721 ttcctgacaa gctgaatttt tccacttgtc ctgtcaaata cagcacccag aagattctgc
781 tggtacgaaa cattggcaac aaaaatgctg tatttcacat caaaacttgt aggcctttct
841 ctatagaacc agctatcgga actcttaatg tgggagagtc catgcaactg gaagtggagt
901 ttgagccaca gagtgtgggc gatcacagtg gaagacttat cgtgtgttat gacacaggtg
961 aaaaggtgtt tgtatctctc tatggagctg ccatagacat gaatataagg ctggataaga
1021 attccttgac catcgagaaa acctacatat ctctggccaa tcagcgaact ataaccattc
1081 acaatcgcag taatatcatt gcccatttcc tgtggaaggt atttgctacc cagcaagaag
1141 aggacagaga aaaatatagg gcctgtgatg atctgatcaa agaggagaag gacgagactg
1201 atgagttttt tgaagagtgc attactgatc ctttactccg agaacatctt tctgttctgt
1261 cccgaacctt tgcgaatcag aggaggctgg tgcagggaga cagcaagctg ttcttcaata
1321 acgttttcac tgtggagccc ctggaaggtg atgtctggcc caactcatca gctgaaatca
1381 ccgtgtactt taacccacta gaagccaagc tctatcaaca gaccatttac tgcgacattt
1441 taggccgaga aatccgtctg cccctccgaa tcaaagggga aggcatggga cctaagattc
1501 acttcaactt tgaattgctg gatattggga aagttttcac tggatctgca cattgttatg
1561 aggcgatact gtacaacaaa ggcagcatcg atgctctctt caacatgacc cctccaactt
1621 cagctttggg ggcctgcttt gttttcagtc ccaaggaagg catcattgaa ccaagtggag
1681 tccaagctat ccagatctcc ttcagctcta ccatcctggg aaactttgaa gaagagttcc
1741 tggtcaatgt caatgggtca cctgagcctg tgaaactgac cattagaggc tgtgtcattg
1801 gacctacctt ccattttaat gttccagctc tgcactttgg tgatgtttcc tttgggtttc
1861 ctcatacctt gatatgttcc ctcaataata cctctttgat ccccatgact tacaaactgc
1921 gtatccctgg ggatggcctt ggccataaaa gcatttcata ttgtgagcag catgtggact
1981 acaaaagacc atcttggacc aaggaagaaa tatcctcaat gaaaccaaaa gaattcacca
2041 tctctcctga ctgtggcacc attcgccccc agggatttgc tgctatcagg gtgacattat
2101 gctccaacac tgtgcagaaa tacgagctgg cactcgtggt ggacgtggag ggcatcggag
2161 aagaggtact ggcgctctta attacagcaa ggtgtgttgt acctgccctc cacctggtca
2221 atacagaggt ggactttggg cactgcttcc tgaagtaccc gtatgagaaa acactccagc
2281 ttgccaatca agatgacctc ccaggattct atgaggtcca gcctcaggtg tgtgaggagg
2341 tgcctactgt gctgttttcc agccccaccc ccagcggggt catctcccca agcagcacca
2401 tccacatacc actggtcctg gagacccagg tcactggaga acacagatcc acggtttaca
2461 tctcaatctt tgggagccag gacccccctt tggtatgtca cttaaagagc gctggagaag
2521 gcccagttat ctacgtccat cccaatcaag tggacttcgg gaatatctac gtcctaaaag
2581 actcttccag gattctcaac ctatgcaacc agtccttcat tcccgcattt ttccaggcac
2641 acatggcaca caaaaaatcc ctttggacga ttgaacccaa tgaaggcatg gttcctccag
2701 aaactgatgt tcaactggca ctgaccgcca acctgaatga cacactgaca ttcaaggact
2761 gtgttatttt ggacattgaa aatagcagta cctatcggat tcctgttcag gcttccggaa
2821 ctggttccac tattgtttca gataagccct ttgctccaga actcaatttg ggggcacatt
2881 ttaggtaagg aaatctcatg gaccagtttt tatagatatc acatatgtta catatgctga
2941 gcatcacctc tactttagaa aattatttta agtaattaaa actagccacc tcagtccctc
3001 tcctttccca tcctcactct tccacctcct gatgtgtatg tcagcaacaa gaagacattt
3061 tctagccat
//