LOCUS AK299331 4519 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ61355 complete cds, highly similar to
CLIP-associating protein 1.
ACCESSION AK299331
VERSION AK299331.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4519)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..4519
/cell_line="NT2"
/cell_type="teratocarcinoma"
/clone="NT2RP8005485"
/clone_lib="NT2RP8"
/db_xref="H-InvDB:HIT000493955"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="mRNA from NT2 neuronal precursor cells after
5-weeks retinoic acid (RA) induction."
/organism="Homo sapiens"
CDS 606..4310
/codon_start=1
/note="highly similar to CLIP-associating protein 1"
/protein_id="BAH13003.1"
/transl_table=1
/translation="MIQSANDKNFDDEDSVDGNRPSSASSTSSKAPPSSRRNVGMGTT
RRLGSSTLGSKSSAAKEGAGAVDEEDFIKAFDDVPVVQIYSSRDLEESINKIREILSD
DKHDWEQRVNALKKIRSLLLAGAAEYDNFFQHLRLLDGAFKLSAKDLRSQVVREACIT
LGHLSSVLGNKFDHGAEAIMPTIFNLIPNSAKIMATSGVVAVRLIIRHTHIPRLIPVI
TSNCTSKSVAVRRRCFEFLDLLLQEWQTHSLERHISVLAETIKKGIHDADSEARIEAR
KCYWGFHSHFSREAEHLYHTLESSYQKALQSHLKNSDSIVSLPQSDRSSSSSQESLNR
PLSAKRSPTGSTTSRVLIHISSFITKASTVSTKSVSTTGSLQRSRSDIDVNAAASAKS
KVSSSSGTTPFSSAAALPPGSYASLGRIRTRRQSSGSATNVASTPDNRGRSRAKVVSQ
SQPGSRSSSPGKLLGSGYGGLTGGSSRGPPVTPSSEKRSKIPRSQGCSRETSPNRIGL
DRFGLGQPGRIPGSVNAMRVLSTSTDLEAAVADALKKPVRRRYEPYGMYSDDDANSDA
SSVCSERSYGSRNGGIPHYLRQTEDVAEVLNHCASSNWSERKEGLLGLQNLLKSQRTL
SRVELKRLCEIFTRMFADPHSKRVFSMFLETLVDFIIIHKDDLQDWLFVLLTQLLKKM
GADLLGSVQAKVQKALDVTRDSFPFDQQFNILMRFIVDQTQTPNLKVKVAILKYIESL
ARQMDPTDFVNSSETRLAVSRIITWTTEPKSSDVRKAAQIVLISLFELNTPEFTMLLG
ALPKTFQDGATKLLHNHLKNSSNTSVGSPSNTIGRTPSRHTSSRTSPLTSPTNCSHGG
LSPSMLDYDTENLNSEEIYSSLRGVTEAIEKFSFRSQEDLNEPIKRDGKKECDIVSRD
GGAASPATEGRGGSEVEGGRTALDNKTSLLNTQPPRAFPGPRARDYNPYPYSDAINTY
DKTALKEAVFDDDMEQLRDVPIDHSDLVADLLKELSNHNERVEERKGALLELLKITRE
DSLGVWEEHFKTILLLLLETLGHKDHSIRALALRVLREILRNQPARFKNYAELTIMKT
LEAHKDSHKEVVRAAEEAASTLASSIHPEQCIKVLCPIIQTADYPINLAAIKMQTKVV
ERIAKESLLQLLVDIIPGLLQGYDNTESSVRKASVFCLVAIYSVIGEDLKPHLAQLTG
SKMKLLNLYIKRAQTTNSNSSSSSDVSTHS"
BASE COUNT 1251 a 1089 c 1073 g 1106 t
ORIGIN
1 gcttaacctc attggggtgg aggagaaggc ggcggctctc tggtccgcag cggcaacagt
61 aacgaaaaac agggctaatg gactgctgaa ttatgaagta tttcagaccc agtagtagaa
121 catcactctg ccactcactc ctttatctcc tactagttat ttaaattgga cttttaatat
181 cctaccagct gctcttcaga cacacatggt gcattgttgc cattccccag attgcatctt
241 tgaaacacag gctcttagta accttcagcg aacaaagagg caacctccca gatacgtctg
301 ctgggaggga gtcatcgtga ctgccctcta gcttttgctg gatctggatt tgaattccac
361 tatggagcct cgcatggagt cctgcctggc gcaggtgttg cagaaggatg tggggaaacg
421 attgcaggtt ggccaagaac tgatagacta tttctcagac aaacagaagt ctgctgacct
481 tgagcatgac cagaccatgt tagataaact tgtggatgga cttgctacct cttgggtgaa
541 ctctagcaat tacaaggttg aatgtaattt ttacaaaatt tgatgaagtc cagaaatctg
601 gaaacatgat acaatctgca aatgataaaa atttcgacga tgaagattct gtggatggta
661 acagaccttc ctctgctagt tctacatcat ccaaggctcc accaagttct cggagaaacg
721 ttggaatggg aaccacccgc cggcttggtt catccaccct tggatccaag tcttcagctg
781 caaaagaagg agctggtgct gttgatgaag aggattttat taaagcattt gatgatgtac
841 ctgtagtaca gatttattcc agccgagacc ttgaggaatc cataaacaaa attagggaaa
901 tattatctga tgacaagcat gattgggagc agagagtaaa tgctctaaaa aagattagat
961 ctttactttt ggctggtgct gctgagtatg ataacttctt tcaacatttg cgtcttttgg
1021 atggagcctt taaactctct gctaaggacc tgcggtctca ggtagtgcgg gaggcttgta
1081 tcacgttggg gcatctgtca tcagttctgg ggaataagtt tgaccatgga gctgaagcca
1141 ttatgccaac tatctttaat ttaattccaa acagtgccaa aattatggcc acatctggtg
1201 ttgtagctgt taggttaatt attcggcaca cacacatccc taggttaata cctgtcataa
1261 caagcaactg tacctctaag tctgtcgcag ttagaaggcg ctgttttgaa tttttagatt
1321 tgcttttaca agaatggcag acacattcac tagaacgaca catatcagta ttagctgaaa
1381 caataaagaa gggaatacat gatgctgatt ccgaagcaag aatagaagcc agaaaatgtt
1441 actggggttt ccacagtcac ttcagcagag aagcagagca cttgtaccac accttggagt
1501 cctcctacca gaaagccctg cagtcccacc tgaagaactc agacagcata gtgtctctgc
1561 ctcagtcaga ccgctcatct tccagctctc aagagagtct aaatcgtccg ctgtctgcca
1621 aaagaagtcc tactggaagt accacatcta gagtccttat tcatatttcc tcctttatca
1681 ctaaagcttc tacagttagt accaaatctg tgtcaacgac tgggtccctc cagcgatctc
1741 gaagtgatat tgatgtgaac gcagcagcca gtgccaaatc caaagtctcc tcatcttcgg
1801 gcacgacgcc tttcagctct gcagcagctt tgcctccagg gtcatacgca tccttaggtc
1861 ggatccgcac aagacggcaa agctctggga gtgccaccaa cgtcgcctct acacctgata
1921 accggggccg cagtcgcgct aaagtggttt cacagtccca gcctggcagc cggtcaagtt
1981 ccccaggaaa attgttggga agtggttatg gtggacttac tgggggctcc tcacgaggcc
2041 cacctgtgac accgtcttca gaaaagcgaa gcaagattcc caggagccag ggatgtagcc
2101 gggaaacaag tccaaaccga ataggattag atcggtttgg gcttggccag ccaggaagaa
2161 tacctggttc tgtgaatgcc atgagagttc tgagcacaag tacagatctt gaagctgctg
2221 ttgctgatgc tttgaagaag cctgtgagga ggagatatga gccgtatggg atgtattctg
2281 acgatgatgc caacagtgat gcctcaagtg tttgctctga gcgctcatat ggctccagga
2341 atggtggcat tccccattat ctgcggcaga ctgaggatgt agcagaagtt ctcaaccact
2401 gtgctagttc aaactggtca gaaaggaaag aagggcttct gggcctgcag aacttactga
2461 agagccaaag aacactgagt cgagttgaac tgaaaaggtt gtgtgagatc ttcactcgga
2521 tgtttgctga ccctcatagc aagagagttt tcagtatgtt tttggagact cttgtggatt
2581 ttataataat tcataaggat gatttacaag actggctttt tgttcttctc acacaattac
2641 ttaagaaaat gggagcagat ttacttggat ctgtgcaagc aaaagttcaa aaggctctag
2701 atgtcacaag ggactccttt ccatttgatc aacaatttaa cattttgatg agatttattg
2761 tggatcaaac tcaaactcca aacctcaagg tcaaagttgc aatcctgaaa tacattgagt
2821 ctctggccag acagatggat ccaacagatt ttgtaaactc tagtgagaca aggcttgctg
2881 tttctagaat cataacctgg acaacagaac caaagagttc agacgtgaga aaggcagcac
2941 agattgtgct aatctctctg tttgaattga atactcctga atttaccatg ttacttggtg
3001 ccttgccaaa aacattccag gatggtgcca ccaaactcct gcacaaccac ctcaagaatt
3061 ccagtaacac cagtgtgggc tctccaagca atacgattgg ccggacgccc tcccgacaca
3121 ccagcagcag gaccagcccc ctgacctcac ccaccaactg ttcccatggg ggtctgtctc
3181 caagcatgct ggactatgat acagagaacc tgaactctga agaaatctat agttctctac
3241 gtggagttac agaagccatt gaaaagttta gttttcgaag ccaagaagat ctgaatgagc
3301 caattaaacg agatggcaaa aaggagtgtg atattgtgtc ccgcgatggg ggcgctgcct
3361 cccctgccac tgagggccgg gggggtagtg aagtagaagg aggccggaca gctctggata
3421 acaagacctc actactcaac acccagcctc cgcgcgcctt cccggggccg cgggcgcgag
3481 actacaaccc gtacccctac tcagatgcca tcaacaccta cgacaagacc gccctgaaag
3541 aggctgtgtt cgatgacgac atggagcagc ttcgagacgt gcccatcgac cattctgacc
3601 tggtggctga ccttctgaaa gagctgtcca accacaatga gcgagtggag gaacggaagg
3661 gagccctgct ggagctgctc aagatcacgc gggaagacag ccttggtgtc tgggaggagc
3721 acttcaagac cattctgctc ctgctgctgg agacccttgg acacaaagac cattcaattc
3781 gagcactggc gttaagagtt ttgagggaaa ttctgagaaa tcaaccagca agatttaaaa
3841 actacgccga gctgacgatt atgaagactc tggaagccca caaagactcc cataaggagg
3901 tggtgagagc ggctgaggag gctgcgtcca cactggccag ttccatccac ccggagcagt
3961 gcatcaaagt gctctgcccc atcatccaga cggccgacta ccccatcaac cttgctgcca
4021 tcaagatgca gaccaaagtc gtcgagagga tcgcaaagga gtcattgctg cagctccttg
4081 tcgacatcat cccaggcttg ctgcagggtt atgacaacac cgaaagtagt gtgcgtaagg
4141 ccagcgtgtt ttgcttagtg gcaatttatt ccgtaatcgg agaagacctg aaacctcacc
4201 ttgcacagct cacagggagc aagatgaagc tactaaactt atacataaag agggcccaga
4261 ccaccaacag caacagcagc tcctcctccg atgtctccac gcacagctaa tggcagtacc
4321 tgtctcttgt gtagacctag aagcaatcgg tggtgcctct cagagacctt tccccacccc
4381 cttcatcggc tgcccagtca gtacaaggag gcccacaaat atttattaca atcagtattt
4441 tggtcccttc cagcttttct gtagaatctt actggtattg aatgtaaagg aagcaaggcc
4501 tgtattgcag tcttcatac
//