LOCUS AK299229 1937 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ56232 complete cds, highly similar to Homo
sapiens armadillo repeat containing 8 (ARMC8), transcript variant
2, mRNA.
ACCESSION AK299229
VERSION AK299229.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1937)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1937
/cell_line="NT2"
/cell_type="teratocarcinoma"
/clone="NT2RP7012920"
/clone_lib="NT2RP7"
/db_xref="H-InvDB:HIT000493853"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="mRNA from NT2 neuronal precursor cells after
5-weeks retinoic acid (RA) induction."
/organism="Homo sapiens"
CDS 2..1597
/codon_start=1
/note="highly similar to Homo sapiens armadillo repeat
containing 8 (ARMC8), transcript variant 2, mRNA"
/protein_id="BAH12976.1"
/transl_table=1
/translation="MYTDATVIPHLMALLSRSRYTQEYICQIFSHCCKGPDHQTILFN
HGAVQNIAHLLTSLSYKVRMQALKCFSVLAFENPQVSMTLVNVLVDGELLPQIFVKML
QRDKPIEMQLTSAKCLTYMCRAGAIRTDDNCIVLKTLPCLVRMCSKERLLEERVEGAE
TLAYLIEPDVELQRIASITDHLIAMLADYFKYPSSVSAITDIKRLDHDLKHAHELRQA
AFKLYASLGANDEDIRKKIIETENMMDRIVTGLSESSVKVRLAAVRCLHSLSRSVQQL
RTSFQDHAVWKPLMKVLQNAPDEILVVASSMLCNLLLEFSPSKEPILESGAVELLCGL
TQSKNPALRVNGIWALMNMAFQAEQKIKADILRSLSTEQLFRLLSDSDLNVLMKTLGL
LRNLLSTRPHIDKIMSTHGKQIMQAVTLILEGEHNIEVKEQTLCILANIADGTTAKDL
IMTNDDILQKIKYYMGHSHVKLQLAAMFCISNLIWNEEEGSQERQDKLRDMGIVDILH
KLSQSPDSNLCDKAKMALQQYLA"
BASE COUNT 574 a 389 c 413 g 561 t
ORIGIN
1 catgtataca gatgccacag tgataccaca cctcatggca ctgcttagca ggtcccgcta
61 tacccaggag tacatctgtc agatcttctc acactgctgt aaagggccag atcatcaaac
121 aattttattt aaccacggtg cagttcagaa tattgctcac ctactaacct cactgtccta
181 caaagttcga atgcaagcac tgaaatgttt ctcagtttta gcttttgaaa acccccaggt
241 atcgatgacc ctggtaaatg ttttggttga tggagaattg ttaccacaga tttttgtgaa
301 gatgttacag agggataagc ctattgagat gcagctcaca tcagcaaaat gtttaactta
361 catgtgtaga gctggagcaa ttcggacaga tgataactgt attgtattga agacattacc
421 ttgtttggtt cgaatgtgca gtaaggagag attactagag gagagagttg aaggagctga
481 gacacttgcc tatctgattg aaccagatgt tgagctacag agaatcgcta gcataactga
541 tcacctcatt gccatgcttg ctgattattt caagtatccc agctcagtga gtgccatcac
601 tgatattaaa aggcttgatc atgatttaaa acatgctcac gaactccgcc aggctgcatt
661 caagctctat gcctctcttg gagcaaatga tgaagacatc cggaagaaga tcattgagac
721 tgaaaatatg atggaccgaa ttgtgactgg cttgtctgag tctagtgtca aggtgcggtt
781 agctgccgtc agatgtttgc acagtttatc cagatctgtg cagcagcttc gaaccagttt
841 ccaggatcat gctgtttgga aacctttaat gaaggtttta caaaatgcac cagatgaaat
901 cctagtggta gcatcttcca tgctgtgtaa tcttcttctt gaattttctc caagcaaaga
961 gccaattttg gaatcaggag ccgtagagct actttgtgga ttaactcaga gtaaaaatcc
1021 tgctttacga gtgaatggaa tttgggcttt aatgaatatg gcatttcagg ctgaacaaaa
1081 aataaaagca gatattttac gaagcttgag tactgaacag ctattccggt tattatcaga
1141 ttcagatttg aatgtgctga tgaagacatt gggacttctt agaaatctcc tctccactcg
1201 tcctcatata gataaaataa tgagtactca tggaaagcaa attatgcaag ccgtcactct
1261 tattctagaa ggggaacata acattgaggt caaagagcag acactgtgca tcttagccaa
1321 catagcggat gggacaacag caaaagatct tattatgacc aatgatgata tcctacagaa
1381 aatcaagtat tacatgggcc attcacatgt taaactgcag cttgcagcca tgttttgtat
1441 atcaaacctc atatggaatg aagaggaagg ttcacaagaa cgccaggata aattacgaga
1501 catgggcatc gtagatattc tacacaaact gagtcagtca ccagattcaa acctttgtga
1561 caaggcaaag atggcactgc agcagtacct ggcatgatgg gagtgcccct gggcacctgc
1621 gagcatccca cctccttgtt taaggaagta caggaaccag cctcatttga ttccttctat
1681 ttgcacaagt caccttggac tgcagggagc tgttttgcaa aagcagttta gtaggcttag
1741 atctcaaatt catcttgaga acattttttt gaggtagtaa tttcctcaga agactcttgt
1801 gttttgtttt ggtttttttt tctgagctac tcggactctt tattagaaca atcaatcatt
1861 ttcctttgga cctacaattt ttgcctatgc tgcagccact ttgtgagtga gaatgaatat
1921 gtctgtgtga acacaca
//