LOCUS AK299102 2034 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ56139 complete cds, highly similar to Zinc
transporter SLC39A6 precursor.
ACCESSION AK299102
VERSION AK299102.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2034)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2034
/cell_line="NT2"
/cell_type="teratocarcinoma"
/clone="NT2RI3007737"
/clone_lib="NT2RI3"
/db_xref="H-InvDB:HIT000493726"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="mRNA from NT2 neuronal precursor cells treated
2-weeks mitotic inhibitor after 5-weeks retinoic acid
(RA) induction."
/note="majorly NT2 neuron"
/organism="Homo sapiens"
CDS 77..1591
/codon_start=1
/note="highly similar to Zinc transporter SLC39A6
precursor"
/protein_id="BAG61161.1"
/transl_table=1
/translation="MYSRNTNENPQECFNASKLLTSHGMGIQVPLNATEFNYLCPAII
NQIDARSCLIHTSEKKAEIPPKTYSLQIAWVGGFIAISIISFLSLLGVILVPLMNRVF
FKFLLSFLVALAVGTLSGDAFLHLLPHSHASHHHSHSHEEPAMEMKRGPLFSHLSSQN
IEESAYFDSTWKGLTALGGLYFMFLVEHVLTLIKQFKDKKKKNQKKPENDDDVEIKKQ
LSKYESQLSTNEEKVDTDDRTEGYLRADSQEPSHFDSQQPAVLEEEEVMIAHAHPQEV
YNEYVPRGCKNKCHSHFHDTLGQSDDLIHHHHDYHHILHHHHHQNHHPHSHSQRYSRE
ELKDAGVATLAWMVIMGDGLHNFSDGLAIGAAFTEGLSSGLSTSVAVFCHELPHELGD
FAVLLKAGMTVKQAVLYNALSAMLAYLGMATGIFIGHYAENVSMWIFALTAGLFMYVA
LVDMVPEMLHNDASDHGCSRWGYFFLQNAGMLLGFGIMLLISIFEHKIVFRINF"
BASE COUNT 588 a 387 c 442 g 617 t
ORIGIN
1 cacatcaaag agccgggtga gccggctggc tggtaggaaa acaaatgaat ctgtgagtga
61 gccccgaaaa ggctttatgt attccagaaa cacaaatgaa aatcctcagg agtgtttcaa
121 tgcatcaaag ctactgacat ctcatggcat gggcatccag gttccgctga atgcaacaga
181 gttcaactat ctctgtccag ccatcatcaa ccaaattgat gctagatctt gtctgattca
241 tacaagtgaa aagaaggctg aaatccctcc aaagacctat tcattacaaa tagcctgggt
301 tggtggtttt atagccattt ccatcatcag tttcctgtct ctgctggggg ttatcttagt
361 gcctctcatg aatcgggtgt ttttcaaatt tctcctgagt ttccttgtgg cactggccgt
421 tgggactttg agtggtgatg cttttttaca ccttcttcca cattctcatg caagtcacca
481 ccatagtcat agccatgaag aaccagcaat ggaaatgaaa agaggaccac ttttcagtca
541 tctgtcttct caaaacatag aagaaagtgc ctattttgat tccacgtgga agggtctaac
601 agctctagga ggcctgtatt tcatgtttct tgttgaacat gtcctcacat tgatcaaaca
661 atttaaagat aagaagaaaa agaatcagaa gaaacctgaa aatgatgatg atgtggagat
721 taagaagcag ttgtccaagt atgaatctca actttcaaca aatgaggaga aagtagatac
781 agatgatcga actgaaggct atttacgagc agactcacaa gagccctccc actttgattc
841 tcagcagcct gcagtcttgg aagaagaaga ggtcatgata gctcatgctc atccacagga
901 agtctacaat gaatatgtac ccagagggtg caagaataaa tgccattcac atttccacga
961 tacactcggc cagtcagacg atctcattca ccaccatcat gactaccatc atattctcca
1021 tcatcaccac caccaaaacc accatcctca cagtcacagc cagcgctact ctcgggagga
1081 gctgaaagat gccggcgtcg ccactttggc ctggatggtg ataatgggtg atggcctgca
1141 caatttcagc gatggcctag caattggtgc tgcttttact gaaggcttat caagtggttt
1201 aagtacttct gttgctgtgt tctgtcatga gttgcctcat gaattaggtg actttgctgt
1261 tctactaaag gctggcatga ccgttaagca ggctgtcctt tataatgcat tgtcagccat
1321 gctggcgtat cttggaatgg caacaggaat tttcattggt cattatgctg aaaatgtttc
1381 tatgtggata tttgcactta ctgctggctt attcatgtat gttgctctgg ttgatatggt
1441 acctgaaatg ctgcacaatg atgctagtga ccatggatgt agccgctggg ggtatttctt
1501 tttacagaat gctgggatgc ttttgggttt tggaattatg ttacttattt ccatatttga
1561 acataaaatc gtgtttcgta taaatttcta gttaaggttt aaatgctaga gtagcttaaa
1621 aagttgtcat agtttcagta ggtcataggg agatgagttt gtatgctgta ctatgcagcg
1681 tttaaagtta gtgggttttg tgatttttgt attgaatatt gctgtctgtt acaaagtcag
1741 ttaaaggtac gttttaatat ttaagttatt ctatcttgga gataaaatct gtatgtgcaa
1801 ttcaccggta ttaccagttt attatgtaaa caagagattt ggcatgacat gttctgtatg
1861 tttcagggaa aaatgtcttt aatgcttttt caagaactaa cacagttatt cctatactgg
1921 attttaggtc tctgaagaac tgctggtgtt taggaataag aatgtgcatg aagcctaaaa
1981 taccaagaaa gcttatactg aatttaagca aagaaataaa ggagaaaaga gaag
//