LOCUS AK299056 2229 bp mRNA linear HUM 24-JUL-2008 DEFINITION Homo sapiens cDNA FLJ53165 complete cds, weakly similar to Homo sapiens thrombospondin repeat containing 1 (TSRC1), transcript variant 1, mRNA. ACCESSION AK299056 VERSION AK299056.1 KEYWORDS FLI_CDNA; oligo capping. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2229) AUTHORS Isogai,T. and Yamamoto,J. TITLE Direct Submission JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases. Contact:Takao Isogai Reverse Proteomics Research Institute; 1-9-11 Kaji-cho, Chiyoda-ku, Tokyo 101-0044, Japan E-mail :flj-cdna@nifty.com REFERENCE 2 AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K., Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y., Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M., Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T. TITLE NEDO human cDNA sequencing project focused on splicing variants JOURNAL Unpublished (2007) COMMENT Human cDNA sequencing project focused on splicing variants of mRNA in NEDO functional analysis of protein and research application project supported by Ministry of Economy, Trade and Industry, Japan; cDNA selection for complete cds sequencing: Reverse Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan (Hitachi) and Japan Biological Informatics Consortium, Japan (JBIC); cDNA complete cds sequencing: JBIC; cDNA library construction: Helix Research Institute supported by Japan Key Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing: Research Association for Biotechnology, Japan, Biotechnology Center, National Institute of Technology and Evaluation, Japan and HRI; cDNA mapping to human genome: Central Research Laboratory, Hitachi; evaluation and annotation: REPRORI. FEATURES Location/Qualifiers source 1..2229 /cell_line="NT2" /cell_type="teratocarcinoma" /clone="NT2RI3002789" /clone_lib="NT2RI3" /db_xref="H-InvDB:HIT000493680" /db_xref="taxon:9606" /mol_type="mRNA" /note="cloning vector: pME18SFL3" /note="mRNA from NT2 neuronal precursor cells treated 2-weeks mitotic inhibitor after 5-weeks retinoic acid (RA) induction." /note="majorly NT2 neuron" /organism="Homo sapiens" CDS 209..2185 /codon_start=1 /note="weakly similar to Homo sapiens thrombospondin repeat containing 1 (TSRC1), transcript variant 1, mRNA" /protein_id="BAG61125.1" /transl_table=1 /translation="MFVSYLILTLLHVQTAVLARPGGESIGCDDYLGSDKVVDKCGVC GGDNTGCQVVSGVFKHALTSLGYHRVVEIPEGATKINITEMYKSNNYLALRSRSGRSI INGNWAIDRPGKYEGGGTMFTYKRPNEISSTAGESFLAEGPTNEILDVYMIHQQPNPG VHYEYVIMGTNAISPQVPPHRRPGEPFNGQMVTEGRSQEEGEQKGRNEEKEDLRGEAP EMFTSESAQTFPVRHPDRFSPHRPDNLVPPAPQPPRRSRDHNWKQLGTTECSTTCGKG SQYPIFRCVHRSTHEEAPESYCDSSMKPTPEEEPCNIFPCPAFWDIGEWSECSKTCGL GMQHRQVLCRQVYANRSLTVQPYRCQHLEKPETTSTCQLKICSEWQIRTDWTSCSVPC GVGQRTRDVKCVSNIGDVVDDEECNMKLRPNDIENCDMGPCAKSWFLTEWSERCSAEC GAGVRTRSVVCMTNHVSSLPLEGCGNNRPAEATPCDNGPCTGKVEWFAGSWSQCSIEC GSGTQQREVICVRKNADTFEVLDPSECSFLEKPPSQQSCHLKPCGAKWFSTEWSMCSK SCQGGFRVREVRCLSDDMTLSNLCDPQLKPEERESCNPQDCVPEVDENCKDKYYNCNV VVQARLCVYNYYKTACCASCTRVANRQTGFLGSR" BASE COUNT 547 a 596 c 670 g 416 t ORIGIN 1 attacatgaa gagatcagct taccagtttt cttcagaaca gaggctgagc tcgaagcgcc 61 gggcagtaca gtgagggaga gccgagggaa ccagcgcggt gcctagcgga actccagggc 121 tggaatcccg agacacaagt gcatctgcta gctgttagca cttggcagac ggagttctcc 181 tctagggtag ttctaacttt gggtaataat gtttgtcagc tacctgatat taacattgct 241 ccacgttcaa acagcagtgt tagcaagacc tgggggagag agcattggct gtgatgacta 301 cttaggctcc gacaaagtcg tggacaaatg tggggtgtgt ggaggagaca acacgggctg 361 tcaggttgtg tcgggcgtgt ttaagcatgc cctcaccagc ctgggctacc accgcgtcgt 421 ggagattccc gagggagcca cgaaaatcaa catcacggag atgtacaaga gcaacaacta 481 tttggccctg agaagtcgtt ctggacgctc catcatcaat gggaactggg caattgatcg 541 accaggaaaa tacgagggcg gagggaccat gttcacctac aagcgtccaa atgagatttc 601 gagcactgcc ggagagtcct ttttggcgga aggtcccacc aacgagatct tggatgtcta 661 catgatacac cagcagccaa acccaggcgt gcactacgag tacgtgatca tggggaccaa 721 cgccatcagc ccccaggtgc caccccacag gagaccaggg gaacccttca atggccagat 781 ggtgacagaa ggcaggagcc aggaggaggg agaacagaaa gggaggaacg aggagaagga 841 agacttgcgt ggggaggccc ctgagatgtt cacctcagaa tcggcacaga ccttcccagt 901 caggcatcca gacagatttt ctccccatcg accggacaac ttggtgccac cagcaccgca 961 gcccccacgg cgcagccggg atcacaactg gaagcagctt gggacaacag aatgttccac 1021 gacctgtggg aaaggatcgc agtaccctat tttccgctgt gtgcacagaa gcactcatga 1081 agaggctcct gagagttact gtgactccag catgaagccg acccccgagg aggagccctg 1141 caacatcttc ccttgcccag ccttctggga catcggggag tggtctgagt gcagcaagac 1201 ctgtggcctg ggcatgcagc accgccaggt tctgtgccgc caggtgtacg ccaaccgcag 1261 cctgacggtg cagccctacc gctgccagca cctggagaaa cctgagacca ccagcacctg 1321 ccaactcaag atctgcagcg agtggcagat ccggaccgac tggacctcgt gctcggtgcc 1381 ctgcggcgtg ggacagagga cccgtgatgt gaagtgtgtg agcaacattg gggatgtggt 1441 tgacgatgag gaatgcaaca tgaagctccg gccgaatgac attgagaact gcgacatggg 1501 accctgtgcc aagagctggt tcctcaccga gtggagcgaa aggtgctcag cggagtgtgg 1561 ggccggagtg cggacacgct cggtggtgtg catgaccaac catgtcagca gcctgcccct 1621 ggagggctgt gggaacaacc ggccggcaga ggccacccca tgtgacaacg gaccctgcac 1681 gggcaaggtg gagtggtttg ccgggagctg gagtcagtgt tccatcgagt gtgggagcgg 1741 gacgcaacag agggaggtga tttgtgttag aaagaatgca gacacctttg aagtgttgga 1801 cccctctgaa tgttctttcc tggagaaacc ccccagccag caatcctgcc acctcaagcc 1861 ttgcggagcc aaatggttta gcaccgaatg gagcatgtgt tccaagagct gccagggtgg 1921 ctttcgggtc cgggaagtgc ggtgtctgtc tgatgacatg actctaagta acctctgtga 1981 ccctcagttg aaaccagaag agagagaatc ttgtaaccct caggactgtg tccctgaagt 2041 tgatgaaaac tgcaaggaca agtactacaa ctgcaacgtg gtggtccagg caagactctg 2101 tgtctacaac tactacaaga ccgcctgctg tgcctcctgc acccgtgtgg ccaacaggca 2161 gacgggcttc ctggggagca gataacactc ctgcaccccc atcagtaggg cagcatcact 2221 gccttcccg //