LOCUS AK298995 3393 bp mRNA linear HUM 24-JUL-2008 DEFINITION Homo sapiens cDNA FLJ55586 complete cds, highly similar to MMS19-like protein. ACCESSION AK298995 VERSION AK298995.1 KEYWORDS FLI_CDNA; oligo capping. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3393) AUTHORS Isogai,T. and Yamamoto,J. TITLE Direct Submission JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases. Contact:Takao Isogai Reverse Proteomics Research Institute; 1-9-11 Kaji-cho, Chiyoda-ku, Tokyo 101-0044, Japan E-mail :flj-cdna@nifty.com REFERENCE 2 AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K., Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y., Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M., Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T. TITLE NEDO human cDNA sequencing project focused on splicing variants JOURNAL Unpublished (2007) COMMENT Human cDNA sequencing project focused on splicing variants of mRNA in NEDO functional analysis of protein and research application project supported by Ministry of Economy, Trade and Industry, Japan; cDNA selection for complete cds sequencing: Reverse Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan (Hitachi) and Japan Biological Informatics Consortium, Japan (JBIC); cDNA complete cds sequencing: JBIC; cDNA library construction: Helix Research Institute supported by Japan Key Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing: Research Association for Biotechnology, Japan, Biotechnology Center, National Institute of Technology and Evaluation, Japan and HRI; cDNA mapping to human genome: Central Research Laboratory, Hitachi; evaluation and annotation: REPRORI. FEATURES Location/Qualifiers source 1..3393 /cell_line="NT2" /cell_type="teratocarcinoma" /clone="NT2RI2022779" /clone_lib="NT2RI2" /db_xref="H-InvDB:HIT000493619" /db_xref="taxon:9606" /mol_type="mRNA" /note="cloning vector: pME18SFL3" /note="mRNA from NT2 neuronal precursor cells treated 2-weeks mitotic inhibitor after 5-weeks retinoic acid (RA) induction." /note="majorly NT2 neuron" /organism="Homo sapiens" CDS 1..3156 /codon_start=1 /note="highly similar to MMS19-like protein" /protein_id="BAG61084.1" /transl_table=1 /translation="MRGEPVSSHRPYPLPRSLVRVMAAAAAVEAAAPMGALWGLVHDF VVGQQEGPADQVAADVKSGNYTVLQVVEALGSSLENPEPRTRARGIQLLSQVLLHCHT LLLEKEVVHLILFYENRLKDHHLVIPSVLQGLKALSLCVALPPGLAVSVLKAIFQEVH VQSLPQVDRHTVYNIITNFMRTREEELKSLGADFTFGFIQVMDGEKDPRNLLVAFRIV HDLISRDYSLGPFVEELFEVTSCYFPIDFTPPPNDPHGIQREDLILSLRAVLASTPRF AEFLLPLLIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPSLWASIRREVFQTA SERVEAEGLAALHSLTACLSRSVLRADAEDLLDSFLSNILQDCRHHLCEPDMKLVWPS AKLLQAAAGASARACDSVTSNVLPLLLEQFHKHSQSSQRRTILEMLLGFLKLQQKWSY EDKDQRPLNGFKDQLCSLVFMALTDPSTQLQLVGIRTLTVLGAQPDLLSYEDLELAVG HLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNLTNGDE PTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQSSDVIAVCQSLR QMAEKCQQDPESCWYFHQTAIPCLLALAVQASMPEKEPSVLRKVLLEDEVLAAMVSVI GTATTHLSPELAAQSVTHIVPLFLDGNVSFLPENSFPSRFQPFQDGSSGQRRLIALLM AFVCSLPRNVEIPQLNQLMRELLELSCCHSCPFSSTAAAKCFAGLLNKHPAGQQLDEF LQLAVDKVEAGLDSGPCRSQAFTLLLWVTKALVLRYHPLSSCLTARLMGLLSDPELGP AAADGFSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYLK GLSHVLNRLPKPVLLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLH VDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKR LVRKEAVSARGEWFLLGSPGS" BASE COUNT 709 a 967 c 891 g 826 t ORIGIN 1 atgcgcggag agcccgtctc gagccaccgc ccatatcccc tcccacggtc tctagttcgc 61 gttatggccg ctgccgcggc tgtggaggcg gcggcgccta tgggtgccct atggggcctc 121 gtgcacgact tcgtcgtggg tcagcaagag ggccccgctg accaggtggc tgcagatgtg 181 aaatctggca actatacagt gttacaagtt gtggaagccc ttgggtcctc tctagagaat 241 ccagaacccc gaactcgggc acgaggaatc cagcttttgt cacaggtgct actccactgt 301 cacaccttgc tcctggagaa ggaagtggta cacctgatac tgttctatga gaaccggctg 361 aaggaccatc atcttgtgat cccatctgtc ctgcagggtt tgaaggcact tagcctgtgt 421 gtggccctgc ccccagggct ggctgtttct gtgcttaaag ccatcttcca ggaagtgcat 481 gtacagtccc tgccacaggt ggaccgacac acagtctaca atatcatcac caattttatg 541 cgaacccggg aagaagagct aaagagccta ggagctgact tcacctttgg cttcatccag 601 gtgatggatg gggaaaagga tccccgtaat cttctggtgg ccttccgcat cgtccatgac 661 ctcatctcca gggactatag cctgggaccc tttgtggagg agttgtttga agtgacatcc 721 tgttatttcc ctatcgattt tacccctcca cctaatgatc cccatggtat ccagagagaa 781 gacctcatcc tgagtcttcg cgctgtgctg gcttctacac cacgatttgc tgagtttctg 841 ctgcccctgt tgattgagaa agtggattct gaggttctga gtgccaagtt ggattctcta 901 cagactctga atgcttgctg tgctgtgtat ggacagaagg aactgaagga cttcctcccc 961 agcctttggg cttctatccg cagagaggtg ttccagacgg caagtgagcg ggtggaggca 1021 gagggcctgg cggccctcca ctccctgact gcgtgtttgt ctcgctctgt gctgagggct 1081 gatgctgagg acctccttga ctccttcctt agcaacattc tacaggactg caggcaccac 1141 ctgtgtgaac cggacatgaa actggtgtgg cctagtgcca agctgttgca ggcagctgca 1201 ggtgcatctg cccgggcctg tgactctgtc accagcaatg tactgccttt actgctggaa 1261 cagttccaca agcacagtca gagcagccag cggcggacaa tccttgaaat gctcctgggt 1321 ttcttgaagc tgcagcagaa atggagctat gaagacaaag atcaaaggcc tctgaatggc 1381 ttcaaggacc agctgtgctc actggtattc atggctctaa cagaccccag cacccagctt 1441 cagcttgttg gcatccgtac actgacagtc ttgggtgccc agccagatct cctatcttat 1501 gaggacttgg agctggcagt gggtcacctg tacagactga gcttcctgaa ggaggattcc 1561 cagagttgca gggtggcagc actggaagca tcaggaaccc tggctgctct ctaccctgtg 1621 gccttcagca gccacctcgt acccaagctc gctgaggagc tgcgtgtagg ggagtcaaat 1681 ttgactaacg gagatgagcc cacccaatgc tcccggcatc tgtgctgtct gcaagccttg 1741 tcagctgtat caacacatcc cagcatcgtc aaggagacac tgcctctgct gctgcagcat 1801 ctctggcaag tgaacagagg gaatatggtt gcacaatcca gtgacgttat tgctgtctgt 1861 cagagcctca gacagatggc agaaaaatgt cagcaggacc ctgagagttg ctggtatttc 1921 caccagacag ctataccttg cctgcttgcc ttggctgtgc aggcctctat gccagagaag 1981 gagccctcag ttctgagaaa agtactattg gaggatgagg tgttggctgc catggtgtct 2041 gtcattggca ctgctacaac ccacctgagc cctgagttag ctgcccagag tgtgacacac 2101 attgtgcccc tcttcttgga tggcaacgtg tcctttctgc ctgaaaacag cttcccgagc 2161 agattccagc cattccagga tggctcctca gggcagaggc ggctgattgc actgcttatg 2221 gcctttgtct gctccctgcc tcgaaatgtg gaaatccctc agctgaacca actcatgcgg 2281 gagcttttgg aactgagctg ctgccacagc tgcccctttt cttccaccgc tgctgccaag 2341 tgctttgcag gactcctcaa caagcaccct gcagggcagc agctggatga attcctacag 2401 ctagctgtgg acaaagtgga ggctggcctg gactctgggc cctgtcgtag tcaggccttc 2461 actcttcttc tctgggtaac aaaggcccta gtgctcagat accatcctct cagctcctgc 2521 cttacagccc ggctcatggg cctcctgagt gacccagaat taggtccagc agcagctgat 2581 ggcttctctc tgctcatgtc tgactgcact gatgtgctga ctcgtgctgg ccatgccgaa 2641 gtgcggatca tgttccgcca gcggttcttc acagataatg tgcctgcttt ggtccagggc 2701 ttccatgctg ctccccaaga tgtgaagcca aactacttga agggtctttc tcatgtactt 2761 aacaggctgc ccaagcctgt actcttgcca gagctgccca cgcttctttc cttgctgctg 2821 gaggccctgt cctgccctga ctgtgtggtg cagctctcca ccctcagctg ccttcagcct 2881 cttctactgg aagcacccca agtcatgagt cttcacgtgg acaccctcgt caccaagttt 2941 ctgaacctca gctctagccc ttccatggct gtccggatcg ccgcactgca gtgcatgcat 3001 gctctcactc gcctgcccac ccctgtgctg ctgccgtaca aaccacaggt gattcgggcc 3061 ttagccaaac ccctggatga caagaagaga ctggtgcgca aggaagcagt gtcagccaga 3121 ggggagtggt ttctgttggg gagccctggc agctgagccc tcagtcctgg cctagactgt 3181 tctgacaatc taacctggga ttactaactg ttgagccatc ttccccaaag cagggaaacc 3241 actggtctct gactgccttt cccacagaca cagcacaaat gctaggcctc tgttgcatgg 3301 ctgtacaaag aacataagag tccatatttc tagtggattt gtaaaataag tgtgtgtgag 3361 acacttgcgt ttgaagaaag atctagggtc ctg //