LOCUS AK298939 1333 bp mRNA linear HUM 21-JAN-2009 DEFINITION Homo sapiens cDNA FLJ50836 complete cds, highly similar to Syndecan-2 precursor. ACCESSION AK298939 VERSION AK298939.1 KEYWORDS FLI_CDNA; oligo capping. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1333) AUTHORS Isogai,T. and Yamamoto,J. TITLE Direct Submission JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases. Contact:Takao Isogai Reverse Proteomics Research Institute; 1-9-11 Kaji-cho, Chiyoda-ku, Tokyo 101-0044, Japan E-mail :flj-cdna@nifty.com REFERENCE 2 AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K., Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y., Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M., Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T. TITLE NEDO human cDNA sequencing project focused on splicing variants JOURNAL Unpublished (2007) COMMENT Human cDNA sequencing project focused on splicing variants of mRNA in NEDO functional analysis of protein and research application project supported by Ministry of Economy, Trade and Industry, Japan; cDNA selection for complete cds sequencing: Reverse Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan (Hitachi) and Japan Biological Informatics Consortium, Japan (JBIC); cDNA complete cds sequencing: JBIC; cDNA library construction: Helix Research Institute supported by Japan Key Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing: Research Association for Biotechnology, Japan, Biotechnology Center, National Institute of Technology and Evaluation, Japan and HRI; cDNA mapping to human genome: Central Research Laboratory, Hitachi; evaluation and annotation: REPRORI. FEATURES Location/Qualifiers source 1..1333 /cell_line="NT2" /cell_type="teratocarcinoma" /clone="NT2RI2013267" /clone_lib="NT2RI2" /db_xref="H-InvDB:HIT000493563" /db_xref="taxon:9606" /mol_type="mRNA" /note="cloning vector: pME18SFL3" /note="mRNA from NT2 neuronal precursor cells treated 2-weeks mitotic inhibitor after 5-weeks retinoic acid (RA) induction." /note="majorly NT2 neuron" /organism="Homo sapiens" CDS 248..766 /codon_start=1 /note="highly similar to Syndecan-2 precursor" /protein_id="BAH12908.1" /transl_table=1 /translation="MYLDNSSIEGASGVYPIDDDDYASASGSGADEDVESPELTTTRP LPKILLTSAAPKVETTTLNIQNKIPAQTKSPEETDKEKVHLSDSERKMDPAEEDTNVY TEKHSDSLFKRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGERKPSSA AYQKAPTKEFYA" BASE COUNT 393 a 266 c 261 g 413 t ORIGIN 1 gtctttgttc cagagcattt gccaaagcca ggtatgtcca gtcaaaggga taatgcaacc 61 gatagctccc aagcctccat atcctcagct gttgcttgtt gccactgagg ggtggacatg 121 ttttcatttg gcatcttaca tgtgagcatc atgactacag actcatctta taccaattaa 181 ataataaact ccactctgtg ggcagaggtt ctgtctggag agagcagagc tgacatctga 241 taaagacatg taccttgaca acagctccat tgaaggagct tcaggagtgt atcctattga 301 tgacgatgac tacgcttctg cgtctggctc gggagctgat gaggatgtag agagtccaga 361 gctgacaaca actcgaccac ttccaaagat actgttgact agtgctgctc caaaagtgga 421 aaccacgacg ctgaatatac agaacaagat acctgctcag acaaagtcac ctgaagaaac 481 tgataaagag aaagttcacc tctctgactc agaaaggaaa atggacccag ccgaagagga 541 tacaaatgtg tatactgaga aacactcaga cagtctgttt aaacggacag aagtcctagc 601 agctgtcatt gctggtggag ttattggctt tctctttgca atttttctta tcctgctgtt 661 ggtgtatcgc atgagaaaga aggatgaagg aagctatgac cttggagaac gcaaaccatc 721 cagtgctgct tatcagaagg cacctactaa ggagttttat gcgtaaaact ccaacttagt 781 gtctctattt atgagatcac tgaacttttc aaaataaagc ttttgcatag aataatgaag 841 atctttgttt tttgttttca ttaaagagcc attctggcac tttaatgata aaatcccatt 901 gtatttaaaa catttcatgt atttctttag aacaacataa aattaaaatt taacatctgc 961 agtgttctgt gaatagcagt ggcaaaatat tatgttatga aaaccctcga tgttcatgga 1021 attggtttaa acttttatgc gcaaatacaa aatgattgtc tttttcctat gactcaaaga 1081 tgaaagctgt ttcatttgtg tcagcatgtc tcagattgac cttaccaagt tggtcttact 1141 ttgttaattt atctgttgtc cccttcctct cctctgccct cccttcttgt gcccttaaaa 1201 ccaaacccta tgccttctgt agctgtcatg gtgcaatttg tctttggaaa attcagataa 1261 tggtaattta gtgtatatgt gattttcaaa tatgtaaact ttaacttcca ctttgtataa 1321 atttttaagt gtc //