LOCUS AK298643 1476 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ55238 complete cds, highly similar to
Syndecan-2 precursor.
ACCESSION AK298643
VERSION AK298643.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1476)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1476
/clone="NESOP2002810"
/clone_lib="NESOP2"
/db_xref="H-InvDB:HIT000493267"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="esophagus"
CDS 346..924
/codon_start=1
/note="highly similar to Syndecan-2 precursor"
/protein_id="BAG60818.1"
/transl_table=1
/translation="MRRVACVSAESRAELTSDKDMYLDNSSIEEASGVYPIDDDDYAS
ASGSGADEDVESPELTTSRPLPKILLTSAAPKVETTTLNIQNKIPAQTKSPEETDKEK
VHLSDSERKMDPAEEDTNVYTEKHSDSLFKRTEVLAAVIAGGVIGFLFAIFLILLLVY
RMRKKDEGSYDLGERKPSSAAYQKAPTKEFYA"
BASE COUNT 411 a 329 c 336 g 400 t
ORIGIN
1 agataccccc ggagctccag ccgcgcggat cgcgcgctcc cgccgctctg cccctaaact
61 tctgccgtag ctccctttca agccagcgaa tttattcctt aaaaccagaa actgaacctc
121 ggcacgggaa aggagtccgc ggaggagcaa aaccacagca gagcaagaag agcttcagag
181 agcagccttc ccggagcacc aactccgtgt cgggagtgca gaaaccaaca agtgagaggg
241 cgccgcgttc ccggggcgca gctgcgggcg gcgggagcag gcgcaggagg cttcgttttg
301 ccctggttgc aagcagcggc tgggagcagc cggtccctgg ggaatatgcg gcgcgtggcc
361 tgcgtgtcgg cggagtcgag agcagagctg acatctgata aagacatgta ccttgacaac
421 agctccattg aagaagcttc aggagtgtat cctattgatg acgatgacta cgcttctgcg
481 tctggctcgg gagctgatga ggatgtagag agtccagagc tgacaacatc tcgaccactt
541 ccaaagatac tgttgactag tgctgctcca aaagtggaaa ccacgacgct gaatatacag
601 aacaagatac ctgctcagac aaagtcacct gaagaaactg ataaagagaa agttcacctc
661 tctgactcag aaaggaaaat ggacccagcc gaagaggata caaatgtgta tactgagaaa
721 cactcagaca gtctgtttaa acggacagaa gtcctagcag ctgtcattgc tggtggagtt
781 attggctttc tctttgcaat ttttcttatc ctgctgttgg tgtatcgcat gagaaagaag
841 gatgaaggaa gctatgacct tggagaacgc aaaccatcca gtgctgctta tcagaaggca
901 cctactaagg agttttatgc gtaaaactcc aacttagtgt ctctatttat gagatcactg
961 aacttttcaa aataaagctt ttgcatagaa taatgaagat ctttgttttt tgttttcatt
1021 aaagagccat tctggcactt taatgataaa atcccattgt atttaaaaca tttcatgtat
1081 ttctttagaa caacataaaa ttaaaattta acatctgcag tgttctgtga atagcagtgg
1141 caaaatatta tgttatgaaa accctcgatg ttcatggaat tggtttaaac ttttatgcgc
1201 aaatacaaaa tgattgtctt tttcctatga ctcaaagatg aaagctgttt catttgtgtc
1261 agcatgtctc agattgacct taccaagttg gtcttacttt gttaatttat ctgttgtccc
1321 cttcctctcc tctgccctcc cttcttgtgc ccttaaaacc aaaccctatg ccttttgtag
1381 ctgtcatggt gcaatttgtc tttggaaaat tcagataatg gtaatttagt gtatatgtga
1441 ttttcaaata tgtaaacttt aacttccact ttgtat
//