LOCUS AK298620 2002 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ56223 complete cds, highly similar to Sorting
nexin-17.
ACCESSION AK298620
VERSION AK298620.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2002)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2002
/cell_line="NB9"
/cell_type="neuroblastoma"
/clone="NB9N42001095"
/clone_lib="NB9N42"
/db_xref="H-InvDB:HIT000493244"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
CDS 144..1496
/codon_start=1
/note="highly similar to Sorting nexin-17"
/protein_id="BAG60799.1"
/transl_table=1
/translation="MAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKL
FSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLEVL
LSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ
EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWIL
VTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSE
LSLQLRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLM
SKDRLQWVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQA
VKSPPLLESPDATRESMVKLSSKLSAVSLRGIGSPSTDASASDVHGNFAFEGIGDEDL
"
BASE COUNT 428 a 549 c 554 g 471 t
ORIGIN
1 aatgagggcc aactccactt tgggctccct atccggacag gtggctcttg ccctttagac
61 tacagttccc agcatgccca ggcgattgcg tcccagaacc gacgtcccac cgccttccca
121 catcggatcg cagggctccc aaaatggcct ataacattca cgtgaatgga gtcctgcact
181 gtcgggtgcg ctacagccag ctcctggggc tgcacgagca gcttcggaag gagtatgggg
241 ccaatgtgct tcctgcattc cccccaaaga agcttttctc tctgactcct gctgaggtag
301 aacagaggag agagcagtta gagaagtaca tgcaagctgt tcggcaagac ccattgcttg
361 ggagcagcga gactttcaac agtttcctgc gtcgggcaca acaggagaca cagcaggtcc
421 ccacagagga agtgtccttg gaagtgctgc tcagcaacgg gcagaaagtt ctggtcaacg
481 tgctaacttc agatcagact gaggatgtcc tggaggctgt agctgcaaag ctggatcttc
541 cagatgactt gattggatac tttagtctat tcttagttcg agaaaaagag gatggagcct
601 tttcttttgt acggaagttg caagagtttg agctgcctta tgtgtctgtc accagccttc
661 ggagtcaaga gtataagatt gtgctaagga agagttattg ggactctgcc tatgatgacg
721 atgtcatgga gaaccgggtt ggcctgaacc tgctttatgc tcagacggta tcagatattg
781 agcgtgggtg gatcttggtc accaaggaac agcaccggca actcaaatct ctgcaagaga
841 aagtctccaa gaaggagttc ctgagactgg cccagacgct gcggcactat ggctacttgc
901 gctttgatgc ctgtgtggct gacttcccag aaaaggactg tcctgtggtg gtgagcgcgg
961 gcaacagtga gctcagcctg cagctccgcc tgcctggcca gcaactccga gaaggctcct
1021 tccgggtcac ccgcatgcga tgctggcggg tcacctcctc tgtaccattg cccagtggaa
1081 gcacgagcag cccaggccgg ggccggggtg aggtgcgcct ggaactggct tttgaatacc
1141 tcatgagcaa ggaccggcta cagtgggtca ccatcactag cccccaggct atcatgatga
1201 gcatctgctt gcagtccatg gttgatgaac tgatggtgaa gaaatctggc ggcagtatca
1261 ggaagatgct gcgccggcgg gtggggggta ctctgagacg ctcagacagc cagcaagcag
1321 tgaagtcccc accactgctt gagtcacctg atgccacccg ggagtctatg gtcaaactct
1381 caagtaagct gagtgccgtg agcttgcggg gaattggcag tcccagcaca gatgccagtg
1441 ccagtgatgt ccacggcaat ttcgccttcg agggcattgg agatgaggat ctgtaatctc
1501 cactgcttgg atgtctgccc tctaccccag aggaatttac agaaacttgc cctgtgcctg
1561 tgtcccccat gctaggggcg gaggggtctt ttccttcttc tttcctacct accccttttc
1621 tcttggccag gggcctcgta tcctaccttt ccttgtcccc tgggctggct gcacagagga
1681 ttgccccttc tcttttcaga gctggccctc gatgccaaat tagcatttag tattttgcac
1741 aaagtctaag ggaccatggc tgcctgcctt ggggaggaac catatctccc tctgggccgc
1801 ttctggcctc ttggagccat gggccaaagg ccaaggggat gggcagaggt ctgtgtttgg
1861 tctggcccag ttccccatca ttaaactcag cctgactgct gcctacctct ggttccctct
1921 cactgcccct gcttccccca tcacagcatg gactactatg ctaagggtaa ggccaaattg
1981 cctgccattg ccaattcagc at
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