LOCUS AK298564 1704 bp mRNA linear HUM 24-JUL-2008 DEFINITION Homo sapiens cDNA FLJ53496 complete cds, highly similar to Homo sapiens cancer susceptibility candidate 4 (CASC4), transcript variant 1, mRNA. ACCESSION AK298564 VERSION AK298564.1 KEYWORDS FLI_CDNA; oligo capping. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1704) AUTHORS Isogai,T. and Yamamoto,J. TITLE Direct Submission JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases. Contact:Takao Isogai Reverse Proteomics Research Institute; 1-9-11 Kaji-cho, Chiyoda-ku, Tokyo 101-0044, Japan E-mail :flj-cdna@nifty.com REFERENCE 2 AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K., Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y., Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M., Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T. TITLE NEDO human cDNA sequencing project focused on splicing variants JOURNAL Unpublished (2007) COMMENT Human cDNA sequencing project focused on splicing variants of mRNA in NEDO functional analysis of protein and research application project supported by Ministry of Economy, Trade and Industry, Japan; cDNA selection for complete cds sequencing: Reverse Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan (Hitachi) and Japan Biological Informatics Consortium, Japan (JBIC); cDNA complete cds sequencing: JBIC; cDNA library construction: Helix Research Institute supported by Japan Key Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing: Research Association for Biotechnology, Japan, Biotechnology Center, National Institute of Technology and Evaluation, Japan and HRI; cDNA mapping to human genome: Central Research Laboratory, Hitachi; evaluation and annotation: REPRORI. FEATURES Location/Qualifiers source 1..1704 /cell_type="normal mesangial cells (NHMC56046-2)" /clone="MESAN2012245" /clone_lib="MESAN2" /db_xref="H-InvDB:HIT000493188" /db_xref="taxon:9606" /mol_type="mRNA" /note="cloning vector: pME18SFL3" /note="primary culture, normal mesangial cells" /organism="Homo sapiens" CDS 98..1345 /codon_start=1 /note="highly similar to Homo sapiens cancer susceptibility candidate 4 (CASC4), transcript variant 1, mRNA" /protein_id="BAG60758.1" /transl_table=1 /translation="MVVIVVLAFNYWSISSRHVLLQEEVAELQGQVQRTEVARGRLEK RNSDLLLLVDTHKKQIDQKEADYGRLSSRLQAREGLGKRCEDDKVKLQNNISYQMADI HHLKEQLAELRQEFLRQEDQLQDYRKNNTYLVKRLEYESFQCGQQMKELRAQHEENIK KLADQFLEEQKQETQKIQSNDGKELDINNQVVPKNIPKVAENVADKNEEPSSNHIPHG KEQIKRGGDAGMPGIEENDLAKVDDLPPALRKPPISVSQHESHQAISHLPTGQPLSPN MPPDSHINHNGNPGTSKQNPSSPLQRLIPGSNLDSEPRIQTDILKQATKDRVSDFHKL KQSRFFDENESPVDPQHGSKLADYNGDDGNVGEYEADKQAELAYNEEEDGDGGEEDVQ DDEERELQMDPADYGKQHFNDVL" BASE COUNT 557 a 354 c 397 g 396 t ORIGIN 1 ctggggccgt gtccgccggg caactccagc cgaggcctgg gcttctgcct gcaggtgtct 61 gcggcgaggc ccctagggta cagcccgatt tggccccatg gtggtgatcg tcgtcctcgc 121 cttcaactac tggagcatct cctcccgcca cgtcctgctt caggaggagg tggccgagct 181 gcagggccag gtccagcgca ccgaagtggc ccgcgggcgg ctggaaaagc gcaattcgga 241 cctcttgctg ttggtggaca cgcacaaaaa acagatcgac cagaaggagg ccgactacgg 301 ccgcctcagc agccggctgc aggccagaga gggcctcggg aagagatgcg aggatgacaa 361 ggttaaacta cagaacaaca tatcgtatca gatggcagac atacatcatt taaaggagca 421 acttgctgag cttcgtcagg aatttcttcg acaagaagac cagcttcagg actataggaa 481 gaacaatact taccttgtga agaggttaga atatgaaagt tttcagtgtg gacagcagat 541 gaaggaattg agagcacagc atgaagaaaa tattaaaaag ttagcagacc agtttttaga 601 ggaacaaaag caagagaccc aaaagattca atcaaatgat ggaaaggaat tggatataaa 661 caatcaagta gtacctaaaa atattccaaa agtagctgag aatgttgcag ataagaatga 721 agaaccctca agcaatcata ttccacatgg gaaagaacaa atcaaaagag gtggtgatgc 781 agggatgcct ggaatagaag agaatgacct agcaaaagtt gatgatcttc cccctgcttt 841 aaggaagcct cctatttcag tttctcaaca tgaaagtcat caagcaatct cccatcttcc 901 aactggacaa cctctctccc caaatatgcc tccagattca cacataaacc acaatggaaa 961 ccccggtact tcaaaacaga atccttccag tcctcttcag cgtttaattc caggctcaaa 1021 cttggacagt gaacccagaa ttcaaacaga tatactaaag caggctacca aggacagagt 1081 cagtgatttc cataaattga agcaaagccg attctttgat gaaaatgaat cccctgttga 1141 tccgcagcat ggctctaaac tggcggatta taatggggat gatggtaacg taggtgagta 1201 tgaggcagac aagcaggctg agctggctta caatgaggaa gaagatggtg atggtggaga 1261 ggaagacgtc caagatgatg aagaacgaga gcttcaaatg gatcctgcag actatggaaa 1321 gcaacatttc aatgatgtcc tttaagtcct aaaggaatgc ttcagaaaac ctaaagtgct 1381 gtaaaatgaa atcattctac tttgtccttt ctgacttttg ttgtaaagac gaattgtatc 1441 agttgtaaag atacattgag atagaattaa ggaaaaactt taatgaagga atgtacccat 1501 gtacatatgt gaactttttc atattgtatt atcaaggtat agactttttt ggttatgata 1561 cagttaagcc aaaaacagct aatctttgca tctaaagcaa actaatgtat atttcacatt 1621 ttattgagcc gacttatttc cacaaataga taaacaggac aaaatagttg tacaggttat 1681 atgtggcata gcataaccac agta //