LOCUS AK297913 1855 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ60313 complete cds, highly similar to
Epithelial-cadherin precursor.
ACCESSION AK297913
VERSION AK297913.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1855)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1855
/clone="HEMBA1004039"
/clone_lib="HEMBA1"
/db_xref="H-InvDB:HIT000492537"
/db_xref="taxon:9606"
/dev_stage="embryo, 10 weeks"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="whole embryo, mainly head"
CDS 125..1552
/codon_start=1
/note="highly similar to Epithelial-cadherin precursor"
/protein_id="BAG60232.1"
/transl_table=1
/translation="MGPWSRSLSALLLLLQVSSWLCQEPEPCHPGFDAESYTFTVPRR
HLERGRVLGRVNFEDCTGRQRTAYFSLDTRFKVGTDGVITVKRPLRFHDPQIHFLVYA
WDSTYRKFSTKVTLNTVGHHHRPPPHQASVSGIQAELLTFPNSSPGLRRQKRDWVIPP
ISCPENEKGPFPKNLVQIKSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVMEGA
LPGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTINRNTGVISVVTTGL
DRESFPTYTLVVQAADLQGEGLSTTATAVITVTDTNDNPPIFNPTTYKGQVPENEANV
VITTLKVTDADAPNTPAWEAVYTILNDDGGQFVVTTNPVNNDGILKTAKGLDFEAKQQ
YILHVAVTNVVPFEVSLTTPTATVTVDVLDVNEAPIFVPPEKRVEVSEDFGVGQEITS
YTAQEPDTFMEQKITYRIWRRGPGL"
BASE COUNT 469 a 538 c 459 g 389 t
ORIGIN
1 agtggcgtcg gaactgcaaa gcacctgtga gcttgcggaa gtcagttcag actccagccc
61 gctccagccc ggcccgaccc gaccgcaccc ggcgcctgcc ctcgctcggc gtccccggcc
121 agccatgggc ccttggagcc gcagcctctc ggcgctgctg ctgctgctgc aggtctcctc
181 ttggctctgc caggagccgg agccctgcca ccctggcttt gacgccgaga gctacacgtt
241 cacggtgccc cggcgccacc tggagagagg ccgcgtcctg ggcagagtga attttgaaga
301 ttgcaccggt cgacaaagga cagcctattt ttccctcgac acccgattca aagtgggcac
361 agatggtgtg attacagtca aaaggcctct acggtttcat gacccacaga tccatttctt
421 ggtctacgcc tgggactcca cctacagaaa gttttccacc aaagtcacgc tgaatacagt
481 ggggcaccac caccgccccc cgccccatca ggcctccgtt tctggaatcc aagcagaatt
541 gctcacattt cccaactcct ctcctggcct cagaagacag aagagagact gggttattcc
601 tcccatcagc tgcccagaaa atgaaaaagg cccatttcct aaaaacctgg ttcagatcaa
661 atccaacggg aatgcagttg aggatccaat ggagattttg atcacggtaa ccgatcagaa
721 tgacaacaag cccgaattca cccaggaggt ctttaagggg tctgtcatgg aaggtgctct
781 tccaggaacc tctgtgatgg aggtcacagc cacagacgcg gacgatgatg tgaacaccta
841 caatgccgcc atcgcttaca ccatcctcag ccaagatcct gagctccctg acaaaaatat
901 gttcaccatt aacaggaaca caggagtcat cagtgtggtc accactgggc tggaccgaga
961 gagtttccct acgtataccc tggtggttca agctgctgac cttcaaggtg aggggttaag
1021 cacaacagca acagctgtga tcacagtcac tgacaccaac gataatcctc cgatcttcaa
1081 tcccaccacg tacaagggtc aggtgcctga gaacgaggct aacgtcgtaa tcaccacact
1141 gaaagtgact gatgctgatg cccccaatac cccagcgtgg gaggctgtat acaccatatt
1201 gaatgatgat ggtggacaat ttgtcgtcac cacaaatcca gtgaacaacg atggcatttt
1261 gaaaacagca aagggcttgg attttgaggc caagcagcag tacattctac acgtagcagt
1321 gacgaatgtg gtaccttttg aggtctctct caccaccccc acagccaccg tcaccgtgga
1381 tgtgctggat gtgaatgaag cccccatctt tgtgcctcct gaaaagagag tggaagtgtc
1441 cgaggatttt ggcgtgggcc aggaaatcac atcctacact gcccaggagc cagacacatt
1501 tatggaacag aaaataacat atcggatttg gagaagagga ccaggacttt gacttgagcc
1561 agctgcacag gggcctggac gctcggcctg aagtgactcg taacgacgtt gcaccaaccc
1621 tcatgagtgt cccccggtat cttccccgcc ctgccaatcc cgatgaaatt ggaaatttta
1681 ttgatgaaaa tctgaaagcg gctgatactg accccacagc cccgccttat gattctctgc
1741 tcgtgtttga ctatgaagga agcggttccg aagctgctag tctgagctcc ctgaactcct
1801 cagagtcaga caaagaccag gactatgact acttgaacga atggggcaat cgctt
//