LOCUS AK297828 2250 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ61323 complete cds, highly similar to Homo
sapiens hypoxia inducible factor 3, alpha subunit (HIF3A),
transcript variant 3, mRNA.
ACCESSION AK297828
VERSION AK297828.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2250)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2250
/clone="HEART2000588"
/clone_lib="HEART2"
/db_xref="H-InvDB:HIT000492452"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="heart"
CDS 161..1963
/codon_start=1
/note="highly similar to Homo sapiens hypoxia inducible
factor 3, alpha subunit (HIF3A), transcript variant 3,
mRNA"
/protein_id="BAG60164.1"
/transl_table=1
/translation="MRPAAGAARRPRCCTSWLTRCPSPAASAPTWTRPLSCASPSATC
ACTASAPQLELIGHSIFDFIHPCDQEELQDALTPQQTLSRRKVEAPTERCFSLRMKST
LTSRGRTLNLKAATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQCLVLICEAIPHP
GSLEPPLGRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVS
KSIHTLLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVE
ETGVVLSLEQTEQHSRRPIQRGAPSQKDTPNPGDSLDTPGPRILAFLHPPSLSEAALA
ADPRRFCSPDLRRLLGPILDGASVAATPSTPLATRHPQSPLSADLPDELPVGTENVHR
LFTSGKDTEAVETDLDIAQDADALDLEMLAPYISMDDDFQLNASEQLPRAYHRPLGAV
PRPRARSFHGLSPPALEPSLLPRWGSDPRLSCSSPSRGDPSASSPMAGARKRTLAQSS
EDEDEGVELLGVRPPKRSPSPEHENFLLFPLSLSFLLTGGPAPGSLQDPSTPLLNLNE
PLGLGPSLLSPYSDEDTTQPGGPFQPRAGSAQAD"
BASE COUNT 408 a 826 c 614 g 402 t
ORIGIN
1 ctttcctgtg gagtcatctc accgccgtgc gcacccactc gtaactcgca cccgggtcct
61 ggctgcaccg catcccctcc tgcaccccct ggatggccct tcagccaacg ggggcctggg
121 cgatggtcga ccacggagct gcgcaaggaa aagtcccggg atgcggcccg cagccggcgc
181 agccaggaga ccgaggtgct gtaccagctg gctcacacgc tgcccttcgc ccgcggcgtc
241 agcgcccacc tggacaaggc ctctatcatg cgcctcacca tcagctacct gcgcatgcac
301 cgcctctgcg ccgcagctgg agctcattgg acacagcatc tttgatttca tccacccctg
361 tgaccaagag gagcttcagg acgccctgac cccccagcag accctgtcca ggaggaaggt
421 ggaggccccc acggagcggt gcttctcctt gcgcatgaag agtacgctca ccagccgcgg
481 gcgcaccctc aacctcaagg cggccacctg gaaggtgctg aactgctctg gacatatgag
541 ggcctacaag ccacctgcgc agacttctcc agctgggagc cctgactcag agcccccgct
601 gcagtgcctg gtgctcatct gcgaagccat cccccaccca ggcagcctgg agcccccact
661 gggccgaggg gccttcctca gccgccacag cctggacatg aagttcacct actgtgacga
721 caggattgca gaagtggctg gctatagtcc cgatgacctg atcggctgtt ccgcctacga
781 gtacatccac gcgctggact ccgacgcggt cagcaagagc atccacacct tgctgagcaa
841 gggccaggca gtaacagggc agtatcgctt cctggcccgg agtggtggct acctgtggac
901 ccagacccag gccacagtgg tgtcaggggg acggggcccc cagtcggaga gtatcgtctg
961 tgtccatttt ttaatcagcc aggtggaaga gaccggagtg gtgctgtccc tggagcaaac
1021 ggagcaacac tctcgcagac ccattcagcg gggcgccccc tctcagaagg acacccctaa
1081 ccctggggac agccttgaca cccctggccc ccggatcctt gccttcctgc acccgccttc
1141 cctgagcgag gctgccctgg ccgctgaccc ccgccgtttc tgcagccctg acctccgtcg
1201 cctcctggga cccatcctgg atggggcttc agtagcagcc actcccagca ccccgctggc
1261 cacacggcac ccccaaagtc ctctttcggc tgatctccca gatgaactac ctgtgggcac
1321 cgagaatgtg cacagactct tcacctccgg gaaagacact gaggcagtgg agacagattt
1381 agatatagct caggatgctg atgctctgga tttggagatg ctggccccct acatctccat
1441 ggatgatgac ttccagctca acgccagcga gcagctaccc agggcctacc acagacctct
1501 gggggctgtc ccccggcccc gtgctcggag cttccatggc ctgtcacctc cagcccttga
1561 gccctccctg ctaccccgct gggggagtga cccccggctg agctgctcca gcccttccag
1621 aggggacccc tcagcatcct ctcccatggc tggggctcgg aagaggaccc tggcccagag
1681 ctcagaggac gaggacgagg gagtggagct gctgggagtg agacctccca aaaggtcccc
1741 cagcccagaa cacgaaaact ttctgctctt tcctctcagc ctgagtttcc ttctgacagg
1801 aggaccagcc ccagggagcc tgcaggaccc cagcacccca ctcctgaacc tgaatgagcc
1861 cctgggcctg ggcccctcac tgctctctcc gtactcagac gaggacacta cccagcccgg
1921 gggccccttc cagccaaggg caggctcagc ccaggctgac tgagccggct cctctcccca
1981 tctgccttct cctcccccag aaaggacctc aaccacactc cacgccggca gccaacgcac
2041 aggatggggg cgccaggaga ggggcccctc tctcctctat gtaccccctg cccacctcgg
2101 gcctacctca gccctcaccc ctctgcctgc tcccaatctg ggggctctct ggggtggtct
2161 cagctcagtg acctctggga ggtggtccct ggccccctcc tccttctctc aggatttctc
2221 ttggggttct caatacttgg ttacctcatt
//