LOCUS AK297809 2854 bp mRNA linear HUM 31-JUL-2008 DEFINITION Homo sapiens cDNA FLJ54369 complete cds, highly similar to Itchy homolog E3 ubiquitin protein ligase (EC 6.3.2.-). ACCESSION AK297809 VERSION AK297809.1 KEYWORDS FLI_CDNA; oligo capping. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2854) AUTHORS Isogai,T. and Yamamoto,J. TITLE Direct Submission JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases. Contact:Takao Isogai Reverse Proteomics Research Institute; 1-9-11 Kaji-cho, Chiyoda-ku, Tokyo 101-0044, Japan E-mail :flj-cdna@nifty.com REFERENCE 2 AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K., Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y., Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M., Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T. TITLE NEDO human cDNA sequencing project focused on splicing variants JOURNAL Unpublished (2007) COMMENT Human cDNA sequencing project focused on splicing variants of mRNA in NEDO functional analysis of protein and research application project supported by Ministry of Economy, Trade and Industry, Japan; cDNA selection for complete cds sequencing: Reverse Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan (Hitachi) and Japan Biological Informatics Consortium, Japan (JBIC); cDNA complete cds sequencing: JBIC; cDNA library construction: Helix Research Institute supported by Japan Key Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing: Research Association for Biotechnology, Japan, Biotechnology Center, National Institute of Technology and Evaluation, Japan and HRI; cDNA mapping to human genome: Central Research Laboratory, Hitachi; evaluation and annotation: REPRORI. FEATURES Location/Qualifiers source 1..2854 /cell_type="chondrocytes (HC)" /clone="HCHON2008922" /clone_lib="HCHON2" /db_xref="H-InvDB:HIT000492433" /db_xref="taxon:9606" /mol_type="mRNA" /note="cloning vector: pME18SFL3" /note="primary culture, chondrocytes" /organism="Homo sapiens" CDS 176..2620 /codon_start=1 /note="highly similar to Itchy homolog E3 ubiquitin protein ligase (EC 6.3.2.-)" /protein_id="BAG60147.1" /transl_table=1 /translation="MSDSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVE VTVDGQSKKTEKCNNTNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQLESEVVT NGETTCSESASQNDDGSRSKDETRVSTNGSDDPEDAGAGENRRVSGNNSPSLSNGGFK PSRPPRPSRPPPPTPRRPASVNGSPSATSESDGSSTGSLPPTNTNTNTSEGATSGLII PLTISGGSGPRPLNPVTQAPLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPEPLPPGWE RRVDNMGRIYYVDHFTRTTTWQRPTLESVRNYEQWQLQRSQLQGAMQQFNQRFIYGNQ DLFATSQSKEFDPLGPLPPGWEKRTDSNGRVYFVNHNTRITQWEDPRSQGQLNEKPLP EGWEMRFTVDGIPYFVDHNRRTTTYIDPRTGKSALDNGPQIAYVRDFKAKVQYFRFWC QQLAMPQHIKITVTRKTLFEDSFQQIMSFSPQDLRRRLWVIFPGEEGLDYGGVAREWF FLLSHEVLNPMYCLFEYAGKDNYCLQINPASYINPDHLKYFRFIGRFIAMALFHGKFI DTGFSLPFYKRILNKPVGLKDLESIDPEFYNSLIWVKENNIEECDLEMYFSVDKEILG EIKSHDLKPNGGNILVTEENKEEYIRMVAEWRLSRGVEEQTQAFFEGFNEILPQQYLQ YFDAKELEVLLCGMQEIDLNDWQRHAIYRHYARTSKQIMWFWQFVKEIDNEKRMRLLQ FVTGTCRLPVGGFADLMGSNGPQKFCIEKVGKENWLPRSHTCFNRLDLPPYKSYEQLK EKLLFAIEETEGFGQE" BASE COUNT 896 a 568 c 648 g 742 t ORIGIN 1 agtagctgtg gtcggggctc gggaccggct gccatcttag tctagggact gaggagtcgc 61 cgccgccccg agtcccggta ccatgcattt cacagtggcc ttgtggagac aacgccttaa 121 cccaaggaag tgactcaaac tgtgagaact tcaggttttc caacctattg gtggtatgtc 181 tgacagtgga tcacaacttg gttcaatggg tagcctcacc atgaaatcac agcttcagat 241 cactgtcatc tcagcaaaac ttaaggaaaa taagaagaat tggtttggac caagtcctta 301 cgtagaggtc acagtagatg gacagtcaaa gaagacagaa aaatgcaaca acacaaacaa 361 tatgaaactt gaagaagtag ttgtgacttt gcagcttgga ggtgacaaag agccaacaga 421 gacaatagga gacttgtcaa tttgtcttga tgggctacag ttagagtctg aagttgttac 481 caatggtgaa actacatgtt cagaaagtgc ttctcagaat gatgatggct ccagatccaa 541 ggatgaaaca agagtgagca caaatggatc agatgaccct gaagatgcag gagctggtga 601 aaataggaga gtcagtggga ataattctcc atcactctca aatggtggtt ttaaaccttc 661 tagacctcca agaccttcac gaccaccacc acccacccca cgtagaccag catctgtcaa 721 tggttcacca tctgccactt ctgaaagtga tgggtctagt acaggctctc tgccgccgac 781 aaatacaaat acaaatacat ctgaaggagc aacatctgga ttaataattc ctcttactat 841 atctggaggc tcaggcccta ggccattaaa tcctgtaact caagctccct tgccacctgg 901 ttgggagcag agagtggacc agcacgggcg agtttactat gtagatcatg ttgagaaaag 961 aacaacatgg gatagaccag aacctctacc tcctggctgg gaacggcggg ttgacaacat 1021 gggacgtatt tattatgttg accatttcac aagaacaaca acgtggcaga ggccaacact 1081 ggaatccgtc cggaactatg aacaatggca gctacagcgt agtcagcttc aaggagcaat 1141 gcagcagttt aaccagagat tcatttatgg gaatcaagat ttatttgcta catcacaaag 1201 taaagaattt gatcctcttg gtccattgcc acctggatgg gagaagagaa cagacagcaa 1261 tggcagagta tatttcgtca accacaacac acgaattaca caatgggaag accccagaag 1321 tcaaggtcaa ttaaatgaaa agcccttacc tgaaggttgg gaaatgagat tcacagtgga 1381 tggaattcca tattttgtgg accacaatag aagaactacc acctatatag atccccgcac 1441 aggaaaatct gccctagaca atggacctca gatagcctat gttcgggact tcaaagcaaa 1501 ggttcagtat ttccggttct ggtgtcagca actggccatg ccacagcaca taaagattac 1561 agtgacaaga aaaacattgt ttgaggattc ctttcaacag ataatgagct tcagtcccca 1621 agatctgcga agacgtttgt gggtgatttt tccaggagaa gaaggtttag attatggagg 1681 tgtagcaaga gaatggttct ttcttttgtc acatgaagtg ttgaacccaa tgtattgcct 1741 gtttgaatat gcagggaagg ataactactg cttgcagata aaccccgctt cttacatcaa 1801 tccagatcac ctgaaatatt ttcgttttat tggcagattt attgccatgg ctctgttcca 1861 tgggaaattc atagacacgg gtttttcttt accattctat aagcgtatct tgaacaaacc 1921 agttggactc aaggatttag aatctattga tccagaattt tacaattctc tcatctgggt 1981 taaggaaaac aatattgagg aatgtgattt ggaaatgtac ttctccgttg acaaagaaat 2041 tctaggtgaa attaagagtc atgatctgaa acctaatggt ggcaatattc ttgtaacaga 2101 agaaaataaa gaggaataca tcagaatggt agctgagtgg aggttgtctc gaggtgttga 2161 agaacagaca caagctttct ttgaaggctt taatgaaatt cttccccagc aatatttgca 2221 atactttgat gcaaaggaat tagaggtcct tttatgtgga atgcaagaga ttgatttgaa 2281 tgactggcaa agacatgcca tctaccgtca ttatgcaagg accagcaaac aaatcatgtg 2341 gttttggcag tttgttaaag aaattgataa tgagaagaga atgagacttc tgcagtttgt 2401 tactggaacc tgccgattgc cagtaggagg atttgctgat ctcatgggga gcaatggacc 2461 acagaaattc tgcattgaaa aagttgggaa agaaaattgg ctacccagaa gtcatacctg 2521 ttttaatcgc ctggacctgc caccatacaa gagctatgag caactgaagg aaaagctgtt 2581 gtttgccata gaagaaacag aaggatttgg acaagagtaa cttctgagaa cttgcaccat 2641 gaatgggcaa gaacttattt gcaatgtttg tccttctctg cctgttgcac atcttgtaaa 2701 attggacaat ggctctttag agagttatct gagtgtaagt aaattaatgt tctcatttag 2761 atttatctcc cagtgatttc tactcagcgt ttccagaaat caggtctgca aatgactagt 2821 cagaaccttg cttaacatga gattttaaca caac //