LOCUS AK297739 1893 bp mRNA linear HUM 24-JUL-2008 DEFINITION Homo sapiens cDNA FLJ57057 complete cds, highly similar to Small subunit processome component 20 homolog. ACCESSION AK297739 VERSION AK297739.1 KEYWORDS FLI_CDNA; oligo capping. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1893) AUTHORS Isogai,T. and Yamamoto,J. TITLE Direct Submission JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases. Contact:Takao Isogai Reverse Proteomics Research Institute; 1-9-11 Kaji-cho, Chiyoda-ku, Tokyo 101-0044, Japan E-mail :flj-cdna@nifty.com REFERENCE 2 AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K., Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y., Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M., Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T. TITLE NEDO human cDNA sequencing project focused on splicing variants JOURNAL Unpublished (2007) COMMENT Human cDNA sequencing project focused on splicing variants of mRNA in NEDO functional analysis of protein and research application project supported by Ministry of Economy, Trade and Industry, Japan; cDNA selection for complete cds sequencing: Reverse Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan (Hitachi) and Japan Biological Informatics Consortium, Japan (JBIC); cDNA complete cds sequencing: JBIC; cDNA library construction: Helix Research Institute supported by Japan Key Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing: Research Association for Biotechnology, Japan, Biotechnology Center, National Institute of Technology and Evaluation, Japan and HRI; cDNA mapping to human genome: Central Research Laboratory, Hitachi; evaluation and annotation: REPRORI. FEATURES Location/Qualifiers source 1..1893 /cell_type="coronary artery smooth muscle cells (HCASMC)" /clone="HCASM2005771" /clone_lib="HCASM2" /db_xref="H-InvDB:HIT000492363" /db_xref="taxon:9606" /mol_type="mRNA" /note="cloning vector: pME18SFL3" /note="primary culture, coronary artery smooth muscle cells" /organism="Homo sapiens" CDS 90..1715 /codon_start=1 /note="highly similar to Small subunit processome component 20 homolog" /protein_id="BAG60089.1" /transl_table=1 /translation="MRKVSKLAVSAQSEPARVQCRQVFLKYILDYPLGDKLRPNLEFM LAQLNYEHETGRESTLEMIAYLFDTFPQGLLHENCGMFFIPLCLMTTNDDSATCKKMA SMTIKSLLGKISLEKKDWLFDMVTTWFGAKKRLNRQLAALICGLFVESEGVDFEKRLG TVLPVIEKEIDPENFKDIMEETEEKAADRLLFSFLTLITKLIKECNIIQFTKPAETLS KIWSHVHSHLRHPHNWVWLTAAQIFGLLFASCQPEELIQKWNTKKTKKHLPEPVAIKF LASDLDQKMKSISLASCHQLHSKFLDQSLGEQVVKNLLFAAKVLYLLELYCEDKQSKI KEDLEEQEALEDGVACADEKAESDGEEKEEVKEELGRPATLLWLIQKLSRIAKLEAAY SPRNPLKRTCIFKFLGAVAMDLGIDKVKPYLPMIIAPLFRELNSTYSEQDPLLKNLSQ EIIELLKKLVGLESFSLAFASVQKQANEKRALRKKRKALEFVTNPDIAAKKKMKKHKN KSEAKKRKIEFLRPGYKAKRQKSHSLKDLAMVE" BASE COUNT 581 a 388 c 438 g 486 t ORIGIN 1 tttatgatac ttcaagacaa gccactgcct ttggtcttct gaaggcaatt ttatcaagaa 61 agctgttggt cccagaaatc gatgaggtca tgcggaaagt atccaagttg gcagtctctg 121 cacaaagcga acctgccagg gtccagtgta gacaggtttt tctgaaatat attcttgact 181 atcccctggg tgacaaattg agaccaaact tggaattcat gctcgctcaa ctgaattacg 241 aacatgagac cgggagagag tccaccttgg aaatgatcgc ctatctcttt gacacgttcc 301 ctcaggggct gctccatgag aactgcggaa tgttctttat ccctctttgt ctaatgacga 361 ccaatgatga ctctgccacg tgcaaaaaga tggcatccat gacaatcaag tccctacttg 421 gtaaaatcag cctcgagaaa aaagattggc tgtttgatat ggttaccact tggtttggag 481 caaaaaagcg cttaaataga caacttgctg ccctgatctg tggcttgttt gtggaaagtg 541 aaggagttga ttttgagaaa agacttggaa ctgtccttcc tgtgattgaa aaggaaattg 601 atcctgaaaa ctttaaagat atcatggaag aaactgaaga aaaagctgca gatcgccttc 661 tgtttagttt tcttacactg ataactaaac ttatcaagga atgtaatatt attcagttta 721 ccaaacccgc tgagactttg agtaaaatct ggagtcatgt gcattctcac ctgagacatc 781 cacacaactg ggtgtggctc acagcagccc agatttttgg attactcttt gcctcttgcc 841 agccagagga gcttattcaa aaatggaata ccaaaaagac caaaaaacac ctcccagaac 901 ctgtagcaat caagttccta gccagtgacc ttgaccaaaa gatgaaaagt atctctctcg 961 cctcttgcca tcaattgcat tccaaattct tggatcagtc tctaggagaa caggttgtta 1021 agaatttgtt gttcgcagcc aaagtcttgt atttactgga actttattgt gaggataagc 1081 aaagtaagat aaaagaagac ctggaagaac aagaagcttt agaagatggt gtggcctgtg 1141 cagatgagaa ggcggagtct gacggagaag agaaggaaga ggtgaaggaa gagctcggca 1201 ggccggccac gctgctgtgg ttgatccaga agctgtcccg gattgcaaaa ctggaagctg 1261 cttattcgcc gagaaacccc ttaaagagaa catgcatctt taagttcctc ggcgccgtag 1321 caatggatct tgggatagac aaggtaaagc cgtatctccc aatgatcata gctcctttgt 1381 ttcgggaact caacagcacc tattcagagc aagatccttt gctgaagaat ctatcccagg 1441 aaatcataga attactcaaa aagctggttg ggcttgagag cttctcatta gcctttgcct 1501 ctgtacagaa acaggctaat gagaaaaggg cactccggaa aaagaggaag gccctggagt 1561 ttgtaactaa tcctgatatt gctgccaaga aaaaaatgaa gaaacacaaa aataaaagtg 1621 aagcaaagaa gagaaagata gagttcctgc gtccaggata taaggccaag agacaaaaaa 1681 gccatagcct gaaagattta gcaatggtgg agtaatgtct ccctgtgctg atacaagcat 1741 gaactttctg gaatattctg ctagtctgaa attacagcag gttgtctggg gtagggggga 1801 ggcgtttttt tttttttttt tgagacaagg tctcactctg tcacccaagg tggagtgcag 1861 tgacgacatc acagctcact gcagcctcaa cct //