LOCUS AK297647 2199 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ55517 complete cds, highly similar to
Receptor-type tyrosine-protein phosphatasealpha precursor (EC
3.1.3.48).
ACCESSION AK297647
VERSION AK297647.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2199)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2199
/clone="FEBRA2026215"
/clone_lib="FEBRA2"
/db_xref="H-InvDB:HIT000492271"
/db_xref="taxon:9606"
/dev_stage="fetal"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 32..1975
/codon_start=1
/note="highly similar to Receptor-type tyrosine-protein
phosphatasealpha precursor (EC 3.1.3.48)"
/protein_id="BAH12641.1"
/transl_table=1
/translation="MVALSSLLVIVFIIIVLYMLRFKKYKQAGSHSNSFRLSNGRTED
VEPQSVPLLARSPSTNRKYPPLPVDKLEEEINRRMADDNKLFREEFNALPACPIQATC
EAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPDSDYINASFINGYQEKNKFIAAQG
PKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNIRVSVEDVT
VLVDYTVRKFCIQQVGDMTNRKPQRLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACN
PQYAGAIVVHCSAGVGRTATFVVIDAMLDMMHTERKVDVYGFVSRIRAQRCQMVQTDM
QYVFIYQALLEHYLYGDTELEVTSLETHLQKIYNKIPGTSNNGLEEEFKKLTSIKIQN
DKMRTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEENTDYVNASFIDGYRQKDSYIA
SQGPLLHTIEDFWRMIWEWKSCSIVMLTELEERGQEKCAQYWPSDGLVSYGDITVELK
KEEECESYTVRDLLVTNTRENKSRQIRQFHFHGWPEVGIPSDGKGMISIIAAVQKQQQ
QSGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLE
QYEFCYKVVQEYIDAFSDYANFK"
BASE COUNT 618 a 508 c 567 g 506 t
ORIGIN
1 cagaagagat gagacaccaa ttattgcggt gatggtggcc ctgtcctctc tgctagtgat
61 cgtgtttatt atcatagttt tgtacatgtt aaggtttaag aaatacaagc aagctgggag
121 ccattccaat tctttccgct tatccaacgg ccgcactgag gacgtggagc cccagagtgt
181 gccacttctg gccagatccc caagcaccaa caggaaatac ccacccctgc ccgtggacaa
241 gctggaagag gaaattaacc ggagaatggc agacgacaat aagctcttca gggaggaatt
301 caacgctctc cctgcatgtc ctatccaggc cacctgtgag gctgcttcca aggaggaaaa
361 caaggaaaaa aatcgatatg taaacatctt gccttatgac cactctagag tccacctgac
421 accggttgaa ggggttccag attctgatta catcaatgct tcattcatca acggctacca
481 agaaaagaac aaattcattg ctgcacaagg accaaaagaa gaaacggtga atgatttctg
541 gcggatgatc tgggaacaaa acacagccac catcgtcatg gttaccaacc tgaaggagag
601 aaaggagtgc aagtgcgccc agtactggcc agaccaaggc tgctggacct atgggaatat
661 tcgggtgtct gtagaggatg tgactgtcct ggtggactac acagtacgga agttctgcat
721 ccagcaggtg ggcgacatga ccaacagaaa gccacagcgc ctcatcactc agttccactt
781 taccagctgg ccagactttg gggtgccttt taccccgatc ggcatgctca agttcctcaa
841 gaaggtgaag gcctgtaacc ctcagtatgc aggggccatc gtggtccact gcagtgcagg
901 tgtagggcgt acagctacct ttgtcgtcat tgatgccatg ctggacatga tgcatacaga
961 acggaaggtg gacgtgtatg gctttgtgag ccggatccgg gcacagcgct gccagatggt
1021 gcaaaccgat atgcagtatg tcttcatata ccaagccctt ctggagcatt atctctatgg
1081 agatacagaa ctggaagtga cctctctaga aacccacctg cagaaaattt acaacaaaat
1141 cccagggacc agcaacaatg gattagagga ggagtttaag aagttaacat caatcaaaat
1201 ccagaatgac aagatgcgga ctggaaacct tccagccaac atgaagaaga accgtgtttt
1261 acagatcatt ccatatgaat tcaacagagt gatcattcca gttaagcggg gcgaagagaa
1321 tacagactat gtgaacgcat cctttattga tggctaccgg cagaaggact cctatatcgc
1381 cagccagggc cctcttctcc acacaattga ggacttctgg cgaatgatct gggagtggaa
1441 atcctgctct atcgtgatgc taacagaact ggaggagaga ggccaggaga agtgtgccca
1501 gtactggcca tctgatggac tggtgtccta tggagatatt acagtggaac tgaagaagga
1561 ggaggaatgt gagagctaca ccgtccgaga cctcctggtc accaacacca gggagaataa
1621 gagccggcag atccggcagt tccacttcca tggctggcct gaagtgggca tccccagtga
1681 cggaaagggc atgatcagca tcatcgccgc cgtgcagaag cagcagcagc agtcagggaa
1741 ccaccccatc accgtgcact gcagcgccgg ggcaggaagg acggggacct tctgtgccct
1801 gagcaccgtc ctggagcgtg tgaaagcaga ggggattttg gatgtcttcc agactgtcaa
1861 gagcctgcgg ctacagaggc cacacatggt ccagacactg gaacagtatg agttctgcta
1921 caaggtggtg caggagtata ttgatgcatt ctcagattat gccaacttca agtaagcggc
1981 aacaagggtc cgtggaccag gaggattgcc tttaatattt tgtaatattc tgttttgtta
2041 atatacccca aattgtgtat atatcttata actgttttag aaattggtac ataggcttct
2101 attacctatt aggtggaaat tttatatgta aatgtgttag cactgatagt cctttttcca
2161 atgttttatt ggggaattaa atagtgtgat gtttggatt
//