LOCUS AK297478 3084 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ55725 complete cds, moderately similar to
Homo sapiens signal peptide, CUB domain, EGF-like 1 (SCUBE1), mRNA.
ACCESSION AK297478
VERSION AK297478.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3084)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3084
/clone="FCBBF3028538"
/clone_lib="FCBBF3"
/db_xref="H-InvDB:HIT000492102"
/db_xref="taxon:9606"
/dev_stage="fetal"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 16..2865
/codon_start=1
/note="moderately similar to Homo sapiens signal peptide,
CUB domain, EGF-like 1 (SCUBE1), mRNA"
/protein_id="BAG59899.1"
/transl_table=1
/translation="MAEPGHSHHLSARVRGRTERRIPRLWRLLLWAGTAFQVTQGTGP
ELHACKESEYHYEYTACDSTGSRWRVAVPHTPGLCTSLPDPVKGTECSFSCNAGEFLD
MKDQSCKPCAEGRYSLGTGIRFDEWDELPHGFASLSANMELDDQCQPNADDSRWMKTT
EKGWEFHSVELNRGNNVLYWRTTAFSVWTKVPKPVLVRNIAITGVAYTSECFPCKPGT
YADKQGSSFCKPCPANSYSNKGETSCHQCDPDKYSEKGSSSCNVRPACTDKDYFYTHT
ACDANGETQLMYKWAKPKICSEDLEGAVKLPASGVKTHCPPCNPGFFKTNNSTCQPCP
YGSYSNGSDCTRCPAGTEPAVGFEYKWWNTLPTNMETTVLSGINFEYKGMTGWEVAGD
HIYTAAGASDNDFMILTLVVPGFRPPQSVMADTENKEVARITFVFETLCSVNCELYFM
VGVNSRTNTPVETWKGSKGKQSYTYIIEENTTTSFTWAFQRTTFHEASRKYTNDVAKI
YSINVTNVMNGVASYCRPCALEASDVGSSCTSCPAGYYIDRDSGTCHSCPPNTILKAH
QPYGVQACVPCGPGTKNNKIHSLCYNDCTFSRNTPTRTFNYNFSALANTVTLAGGPSF
TSKGLKYFHHFTLSLCGNQGRKMSVCTDNVTDLRIPEGESGFSKSITAYVCQAVIIPP
EVTGYKAGVSSQPVSLADRLIGVTTDMTLDGITSPAELFHLESLGIPDVIFFYRSNDV
TQSCSSGRSTTIRVRCSPQKTVPGSLLLPGTCSDGTCDGCNFHFLWESAAACPLCSVA
DYHAIVSSCVAGIQKTTYVWREPKLCSGGISLPEQRVTICRTIDFWLKVGISAGTCTA
ILLTVLTCYFWKKNQKLEYKNSKLVMNATLKDCDLPAADSCAIMEGEDVEDDLIFTSK
KSLFGKIKSFTSKRTPDGFDSVPLKTSSGGPDMDL"
BASE COUNT 747 a 879 c 759 g 699 t
ORIGIN
1 actcaggaca acgctatggc tgagcctggg cacagccacc atctctccgc cagagtcagg
61 ggaagaactg agaggcgcat accccggctg tggcggctgc tgctctgggc tgggaccgcc
121 ttccaggtga cccagggaac gggaccggag cttcatgcct gcaaagagtc tgagtaccac
181 tatgagtaca cggcgtgtga cagcacgggt tccaggtgga gggtcgccgt gccgcatacc
241 ccgggcctgt gcaccagcct gcctgacccc gtcaagggca ccgagtgctc cttctcctgc
301 aacgccgggg agtttctgga tatgaaggac cagtcatgta agccatgcgc tgagggccgc
361 tactccctcg gcacaggcat tcggtttgat gagtgggatg agctgcccca tggctttgcc
421 agcctctcag ccaacatgga gctggatgac cagtgccagc ccaatgcaga tgactccagg
481 tggatgaaga ccacagagaa aggatgggaa ttccacagtg tggagctaaa tcgaggcaat
541 aatgtcctct attggagaac cacagccttc tcagtatgga ccaaagtacc caagcctgtg
601 ctggtgagaa acattgccat aacaggggtg gcctacactt cagaatgctt cccctgcaaa
661 cctggcacgt atgcagacaa gcagggctcc tctttctgca aaccttgccc agccaactct
721 tattcaaata aaggagaaac ttcttgccac cagtgtgacc ctgacaaata ctcagagaaa
781 ggatcttctt cctgtaacgt gcgcccagct tgcacagaca aagattattt ctacacacac
841 acggcctgcg atgccaacgg agagacacaa ctcatgtaca aatgggccaa gccgaaaatc
901 tgtagcgagg accttgaggg ggcagtgaag ctgcctgcct ctggtgtgaa gacccactgc
961 ccaccctgca acccaggctt cttcaaaacc aacaacagca cctgccagcc ctgcccatat
1021 ggttcctact ccaatggctc agactgtacc cgctgccctg cagggactga acctgctgtg
1081 ggatttgaat acaaatggtg gaacacgctg cccacaaaca tggaaacgac cgttctcagt
1141 gggatcaact tcgagtacaa gggcatgaca ggctgggagg tggctggtga tcacatttac
1201 acagctgctg gagcctcaga caatgacttc atgattctca ctctggttgt gccaggattt
1261 agacctccgc agtcggtgat ggcagacaca gagaataaag aggtggccag aatcacattt
1321 gtctttgaga ccctctgttc tgtgaactgt gagctctact tcatggtggg tgtgaattct
1381 aggaccaaca ctcctgtgga gacgtggaaa ggttccaaag gcaaacagtc ctatacctac
1441 atcattgagg agaacactac cacgagcttc acctgggcct tccagaggac cacttttcat
1501 gaggcaagca ggaagtacac caatgacgtt gccaagatct actccatcaa tgtcaccaat
1561 gttatgaatg gcgtggcctc ctactgccgt ccctgtgccc tagaagcctc tgatgtgggc
1621 tcctcctgca cctcttgtcc tgctggttac tatattgacc gagattcagg aacctgccac
1681 tcctgccccc ctaacacaat tctgaaagcc caccagcctt atggtgtcca ggcctgtgtg
1741 ccctgtggtc cagggaccaa gaacaacaag atccactctc tgtgctacaa tgattgcacc
1801 ttctcacgca acactccaac caggactttc aactacaact tctccgcttt ggcaaacacc
1861 gtcactcttg ctggagggcc aagcttcact tccaaagggt tgaaatactt ccatcacttt
1921 accctcagtc tctgtggaaa ccagggtagg aaaatgtctg tgtgcaccga caatgtcact
1981 gacctccgga ttcctgaggg tgagtcaggg ttctccaaat ctatcacagc ctacgtctgc
2041 caggcagtca tcatcccccc agaggtgaca ggctacaagg ccggggtttc ctcacagccc
2101 gtcagccttg ctgatcgact tattggggtg acaacagata tgactctgga tggaatcacc
2161 tccccagctg aacttttcca cctggagtcc ttgggaatac cggacgtgat cttcttttat
2221 aggtccaatg atgtgaccca gtcctgcagt tctgggagat caaccaccat ccgcgtcagg
2281 tgcagtccac agaaaactgt ccctggaagt ttgctgctgc caggaacgtg ctcagatggg
2341 acctgtgatg gctgcaactt ccacttcctg tgggagagcg cggctgcttg cccgctctgc
2401 tcagtggctg actaccatgc tatcgtcagc agctgtgtgg ctgggatcca gaagactact
2461 tacgtgtggc gagaacccaa gctatgctct ggtggcattt ctctgcctga gcagagagtc
2521 accatctgca gaaccataga tttctggctg aaagtgggca tctctgcagg cacctgtact
2581 gccatcctgc tcaccgtctt gacctgctac ttttggaaaa agaatcaaaa actagagtac
2641 aagaactcca agctggtgat gaatgctact ctcaaggact gtgacctgcc agcagctgac
2701 agctgcgcca tcatggaagg cgaggatgta gaggacgacc tcatctttac cagcaagaag
2761 tcactctttg ggaagatcaa atcatttacc tccaagagga ctcctgatgg atttgactca
2821 gtgccgctga agacatcctc aggaggccca gacatggacc tgtgagaggc actgcctgcc
2881 tcacctgcct cctcaccttg catagcacct ttgcaagcct gcggcgattt gggtgccagc
2941 atcctgcaac acccactgct ggaaatctct tcattgtggc cttatcagat gtttgaattt
3001 cagatctttt tttatagagt acccaaaccc tcctttctgc ttgcctcaaa cctgccaaat
3061 atacccacac tttgtttgta aatt
//