LOCUS AK297447 2393 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ54094 complete cds, highly similar to
Gephyrin.
ACCESSION AK297447
VERSION AK297447.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2393)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2393
/clone="FCBBF3025573"
/clone_lib="FCBBF3"
/db_xref="H-InvDB:HIT000492071"
/db_xref="taxon:9606"
/dev_stage="fetal"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 16..2133
/codon_start=1
/note="highly similar to Gephyrin"
/protein_id="BAH12583.1"
/transl_table=1
/translation="MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQ
DPSLLGGTISAYKIVPDEIEEIKATKEVIEREAPGMALAMLMGSLNVTPLGMLSRPVC
GIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVHDELEDLPSPPP
PLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAIAAKIPDSII
SRGVQVLPRDTASLSTTPSESPRAQATSRLSTASCPTPKVQSRCSSKENILRASHSAV
DITKVARRHRMSPFPLTSMDKAFITVLEMTPVLGTEIINYRDGMGRVLAQDVYAKDNL
PPFPASVKDGYAVRAADGPGDRFIIGESQAGEQPTQTVMPGQVMRVTTGAPIPCGADA
VVQVEDTELIRESDDGTEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSE
IGLLATVGVTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGY
PTINLGIVGDNPDDLLNALNEGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFG
RVFMKPGLPTTFATLDIDGVRKIIFALPGNPVSAVATCNLFVVPALRKMQGILDPRPT
IIKARLSCDVKLDPRPEYHRCILTWHHQEPLPWAQSTGNRMSSRLMSMRSANGLLMLP
PKTEQYVELHKGEVVDVMVIGRL"
BASE COUNT 698 a 551 c 552 g 592 t
ORIGIN
1 actgcgctgg gaaacatggc gaccgaggga atgatcctta ctaaccacga ccatcaaatc
61 cgtgtcggag tccttacagt gagtgatagt tgcttcagga atcttgcaga agaccgcagt
121 gggataaatc tcaaagatct cgtacaagat ccttctttgt tgggtgggac tatatcagca
181 tacaagatag taccagatga aatagaagaa atcaaggcca caaaagaagt aatagaacgg
241 gaagcaccag ggatggccct ggcaatgctg atgggatcac ttaatgttac acctctgggc
301 atgctctcta ggcctgtatg tggaatcaga gggaaaacgc tcataattaa cctgccaggt
361 agcaagaaag gatctcagga atgctttcaa ttcatactgc cagctctacc tcatgccatt
421 gaccttttac gtgatgccat tgtaaaagta aaggaggtgc atgatgaact tgaagatttg
481 ccttccccac ctccccctct ttcccctcct cctactacca gcccccataa acagacagaa
541 gacaaaggag ttcaatgtga ggaagaggaa gaagagaaga aagacagtgg tgttgcttca
601 acagaagata gttcctcatc acatataact gcagcagcca ttgctgccaa gattccagac
661 tccatcattt ctcgtggtgt tcaggtgctc ccacgagaca cagcctccct cagcactact
721 ccttcagaat cgcctcgtgc tcaggctaca tctcgcctct ctacagcttc ctgcccaaca
781 ccaaaagtcc agtccaggtg cagcagcaag gagaacattc tcagagccag tcacagtgct
841 gtcgatatca ccaaggtggc tagaagacat cgcatgtctc cttttcctct gacatctatg
901 gacaaagcct ttatcacagt cctggagatg actccggtgc ttgggacaga aatcatcaat
961 taccgagatg gaatggggcg agtccttgct caagatgtat atgcaaaaga caatttaccc
1021 cccttcccag catcagtaaa agatggctat gctgtccgag ctgctgatgg cccaggagat
1081 cgtttcatca ttggggaatc ccaagctggt gaacagccaa ctcagacagt aatgccagga
1141 caagtcatgc gggttacaac aggtgctcca ataccctgcg gtgctgatgc agtagtacaa
1201 gtggaagata ccgaacttat cagggaatca gatgatggca ctgaagaact tgaagtgcga
1261 attctggtgc aagctcggcc aggccaagat atcagaccca tcggccatga cattaaaaga
1321 ggggaatgtg ttttggccaa aggaacccac atgggcccct cagagattgg tcttctggca
1381 actgtaggtg tcacagaggt tgaagttaat aagtttccag tggttgcagt catgtcaaca
1441 gggaatgagc tgctaaatcc tgaagatgac ctcttaccag ggaagattcg agacagcaat
1501 cgttcaactc ttctagcaac aattcaggaa catggttacc ccacgatcaa cttgggtatt
1561 gtaggagaca acccagatga cttactcaat gccttgaatg agggtatcag tcgtgctgat
1621 gtcatcatca catcaggggg tgtatccatg ggggaaaagg actatctcaa gcaggtgctg
1681 gacattgatc ttcatgctca gatccatttt ggcagggttt ttatgaaacc aggcttgcca
1741 acaacatttg caactttgga tattgatggt gtaagaaaaa taatctttgc actacctggg
1801 aatcctgtat cggctgtggc cacctgcaat ctctttgttg tgcctgcact gaggaaaatg
1861 cagggcatct tggatcctcg gccaaccatc atcaaagcaa ggttatcatg tgatgtaaaa
1921 cttgatcctc gtccagaata ccatcggtgt atactaactt ggcatcacca agaaccacta
1981 ccttgggcac agagtacagg taatcgaatg agcagccgtc tgatgagcat gcgcagtgcc
2041 aatggattgt tgatgctacc tccaaagaca gaacagtacg tggagctcca caaaggcgag
2101 gtggtggatg tcatggtcat tggacggcta tgatggtcac cagcaggaga aagctttgat
2161 gcatgtccac atatcattga ctgtatcctg taatatgcaa cggcacagct agttttcccg
2221 atttggataa aagttgatct gtatagtcaa catcttgaac tatatttcaa atgaatttaa
2281 atatctttta aagaaaaaaa cacctaaaaa taaatcttaa cagaaaattc tgttctgatt
2341 atatcaaggc aaatttttcc tttcttgcaa attgctttgt gtgttcaatg cta
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