LOCUS AK297420 1499 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ55790 complete cds, highly similar to
CLIP-associating protein 1.
ACCESSION AK297420
VERSION AK297420.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1499)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1499
/clone="FCBBF3023302"
/clone_lib="FCBBF3"
/db_xref="H-InvDB:HIT000492044"
/db_xref="taxon:9606"
/dev_stage="fetal"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 7..1329
/codon_start=1
/note="highly similar to CLIP-associating protein 1"
/protein_id="BAH12576.1"
/transl_table=1
/translation="MLLGALPKTFQDGATKLLHNHLKNSSNTSVGSPSNTIGRTPSRH
TSSRTSPLTSPTNCSHGGLSPSMLDYDTENLNSEEIYSSLRGVTEAIEKFSFRSQEDL
NEPIKRDGKKECDIVSRDGGAASPATEGRGGSEVEGGRTALDNKTSLLNTQPPRAFPG
PRARDYNPYPYSDAINTYDKTALKKAVFDDDMEQLRDVPIDHSDLVADLLKELSNHNE
RVEERKGALLELLKITREDSLGVWEEHFKTILLLLLETLGDKDHSIRALALRVLREIL
RNQPARFKNYAELTIMKTLEAHKDSHKEVVRAAEEAASTLASSIHPEQCIKVLCPIIQ
TADYPINLAAIKMQTKVVERIAKESLLQLLVDIIPGSLQGYDNTESSVRKASVFCLVA
IYSVIGEDLKPHLAQLTGSKMKLLNLYIKRAQTTNSNSSSSSDVSTHS"
BASE COUNT 400 a 425 c 369 g 305 t
ORIGIN
1 tttaccatgt tacttggtgc cttgccaaaa acattccagg atggtgccac caaactcctg
61 cacaaccacc tcaagaattc cagtaacacc agtgtgggct ctccaagcaa tacgattggc
121 cggacgccct cccgacacac cagcagcagg accagccccc tgacctcacc caccaactgt
181 tcccatgggg gtctgtctcc aagcatgctg gactatgata cagagaacct gaactctgaa
241 gaaatctata gttctctacg tggagttaca gaagccattg aaaagtttag ttttcgaagc
301 caagaagatc tgaatgagcc aattaaacga gatggcaaaa aggagtgtga tattgtgtcc
361 cgcgatgggg gcgctgcctc ccctgccact gagggccggg ggggtagtga agtagaagga
421 ggccggacag ctctggataa caagacctca ctactcaaca cccagcctcc gcgcgccttc
481 ccagggccgc gggcgcgaga ctacaacccg tacccctact cagatgccat caacacctac
541 gacaagaccg ccctgaaaaa ggctgtgttc gatgacgaca tggagcagct tcgagacgtg
601 cccatcgacc attctgacct ggtggctgac cttctgaaag agctgtccaa ccacaatgag
661 cgagtggagg aacggaaggg agccctgctg gagctgctca agatcacgcg ggaagacagc
721 cttggtgtct gggaggagca cttcaagacc atcctgctcc tgctgctgga gacccttgga
781 gacaaagacc attcaattcg agcactggcg ttaagagttt tgagggaaat tctgagaaat
841 caaccagcaa gatttaaaaa ctacgccgag ctgacgatta tgaagactct ggaagcccac
901 aaagactccc ataaggaggt ggtgagagcg gctgaggagg ctgcgtccac actggccagt
961 tccatccacc cggagcagtg catcaaggtg ctctgcccca tcatccagac ggccgactac
1021 cccatcaacc ttgctgccat caagatgcag accaaagtcg tcgagaggat cgcaaaggag
1081 tcattgctgc agctccttgt cgacatcatc ccaggctcgc tgcagggtta tgacaacacc
1141 gaaagtagtg tgcgtaaggc cagcgtgttt tgcttagtgg caatttattc cgtaatcgga
1201 gaagacctga aacctcacct tgcacagctc acagggagca agatgaagct actaaactta
1261 tacataaaga gggcccagac caccaacagc aacagcagct cctcctccga tgtctccacg
1321 cacagctaat ggcagtacct gtctcttgtg tagacctaga agcaatcggt ggtgcctctc
1381 agagaccttt ccccaccccc ttcatcggct gcccagtcag tacaaggagg cccacaaata
1441 tttattacaa tcagtatttt ggtcccttcc agcttttctg tagaatctta ctggtattg
//