LOCUS AK297259 3945 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ55338 complete cds, highly similar to
CLIP-associating protein 1.
ACCESSION AK297259
VERSION AK297259.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3945)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3945
/clone="FCBBF3005162"
/clone_lib="FCBBF3"
/db_xref="H-InvDB:HIT000491883"
/db_xref="taxon:9606"
/dev_stage="fetal"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 41..3781
/codon_start=1
/note="highly similar to CLIP-associating protein 1"
/protein_id="BAH12531.1"
/transl_table=1
/translation="MTTGKDKNFDDEYSVDGNRPSSASSTSSKAPPSSRRNVGMGTTR
RLGSSTLGSKSSAAKEGAGAVDEEDFIKAFDDVPVVQIYSSRDLEESINKIREILSDD
KHDWEQRVNALKKIRSLLLAGAAEYDNFFQHLRLLDGAFKLSAKDLRSQVVREACITL
GHLSSVLGNKFGHGAEAIMPTIFNLIPNSAKIMATSGVVAVRLIIRHTHIPRLIPVIT
SNCTSKSVAVRRRCFEFLDLLLQEWQTHSLERHISVLAETIKKGIHDADSEARIEARK
CYWGFHSHFSREAEHLYHTLESSYQKALRSHLKNSDSIVSLPQSDRSSSSSQESLNRP
LSAKRSPTGSTTSRASTVSTKSVSTTGSLQRSRSDIDVNAAASAKSKVSSSSGTTPFS
SAAALPPGSYASLDGTTTKAEGRIRTRRQSSGSATNVASTPDNRGRSRAKVVSQSQRS
RSANPAGAGSRSSSPGKLLGSGYGGLTGGSSRGPPVTPSSEKRSKIPRSQGCSRETSP
NRIGLDRFGLGQPGRIPGSVNAMRVLSTSTDLEAAVADALLLGDSRSKKPVRRRYEPY
GMYSDDDANSDASSVCSERSYGSRNGGIPHYLRQTEDVAEVLNHCASSNWSERKEGLL
GLQNLLKSQRTLSRVELKRLCEIFTRMFADPHSKRVFSMFLETLVDFIIIHKDDLQDW
LFVLLTQLLKKMGADLLGSVQAKVQKALDVTRDSFPFDQQFNILMRFIVDQTQTPNLK
VEVAILKYIESLARQMDPTDFVNSSETRLAVSRIITWTTEPKSSDVRKAAQIVLISLF
ELNTPEFTMLLGALPKTFQDGATKLLHNHLKNSSNTSVGSPSNTIGRTPSRHTSSRTS
PLTSPTNCSHGGLSPSMLDYDTENLNSEEIYSSLRGVTEAIEKFSFRSQEDLNEPIKR
DGNKECDIVSRDGGAASPATEGRGGSEVEGGRTALDNKTSLLNTQPPRAFPGPRARDY
NPYPYSDAINTYDKTALKEAVFDDDMEQLRDVPIDHSDLVADLLKELSNHNERVEERK
GALLELLKITREDSLGVWEEHFKTILLLLLETLGDKDHSIRALALRVLREILRNQPAR
FKNYAELTIMKTLEAHKDSHKEVVRAAEEAASTLASSIHPEQCIKVLCPIIQTADYPI
NLAAIKMQTKVVERIAKESLLQLLVDIIPGLLQGYDNTESSVRKASVFCLVAIYSVIG
EDLKPHLAQLTGSKMKLLNLYIKRAQTTNSNSSSSSDVSTHS"
BASE COUNT 1087 a 957 c 953 g 948 t
ORIGIN
1 agagcagtgt ttttatttgg taccaggatt actgacaatc atgactactg ggaaagataa
61 aaatttcgac gatgaatatt ctgtggatgg taacagacct tcctctgcta gttctacatc
121 atccaaggct ccaccaagtt ctcggagaaa cgttggaatg ggaaccaccc gccggcttgg
181 ttcatccacc cttggatcca agtcttcagc tgcaaaagaa ggagctggtg ctgttgatga
241 agaggatttt attaaagcat ttgatgatgt acctgtagta cagatttatt ccagccgaga
301 ccttgaggaa tccataaaca aaattaggga aatattatct gatgacaagc atgattggga
361 gcagagagta aatgctctaa aaaagattag atctttactt ttggctggtg ctgctgagta
421 tgataacttc tttcaacatt tgcgtctttt ggatggagcc tttaaactct ctgctaagga
481 cctgcggtct caggtagtgc gggaggcttg tatcacgttg gggcatctgt catcagttct
541 ggggaataag tttggccatg gagctgaagc cattatgcca actatcttta atttaattcc
601 aaacagtgcc aaaattatgg ccacatctgg tgttgtagct gttaggttaa ttattcggca
661 cacacacatc cctaggttaa tacctgtcat aacaagcaac tgtacctcta agtctgtcgc
721 agttagaagg cgctgttttg aatttttaga tttgctttta caagaatggc agacacattc
781 actagaacga cacatatcag tattagctga aacaataaag aagggaatac atgatgctga
841 ttccgaagca agaatagaag ccagaaaatg ttactggggt ttccacagtc acttcagcag
901 agaagcagag cacttgtacc acaccttgga gtcctcctac cagaaagccc tgcggtccca
961 cctgaagaac tcagacagca tagtgtctct gcctcagtca gaccgctcat cttccagctc
1021 tcaagagagt ctaaatcgtc cgctgtctgc caaaagaagt cctactggaa gtaccacatc
1081 tagagcttct acagttagta ccaaatctgt gtcaacgact gggtccctcc agcgatctcg
1141 aagtgatatt gatgtgaacg cagcagccag tgccaaatcc aaagtctcct catcttcggg
1201 cacgacgcct ttcagctctg cagcagcttt gcctccaggg tcatacgcat ccttagatgg
1261 tactaccact aaagcggagg gtcggatccg cacaagacgg caaagctctg ggagtgccac
1321 caacgtcgcc tctacacctg ataaccgggg ccgcagtcgc gctaaagtgg tttcacagtc
1381 ccagcgatcc agatctgcta atcctgctgg tgctggcagc cggtcaagtt ccccaggaaa
1441 attgttggga agtggttatg gtggacttac tgggggctcc tcacgaggcc cacctgtgac
1501 accgtcttca gaaaagcgaa gcaagattcc caggagccag ggatgtagcc gggaaacaag
1561 tccaaaccga ataggattag atcggtttgg gcttggccag ccaggaagaa tacctggttc
1621 tgtgaatgcc atgagagttc tgagcacaag tacagatctt gaagctgctg ttgctgatgc
1681 tttgctgtta ggagactcca ggagcaagaa gcctgtgagg aggagatatg agccgtatgg
1741 gatgtattct gacgatgatg ccaacagtga tgcctcaagt gtttgctctg agcgctcata
1801 tggctccagg aatggtggca ttccccatta tctgcggcag actgaggatg tagcagaagt
1861 tctcaaccac tgtgctagtt caaactggtc agaaaggaaa gaagggcttc tgggcctgca
1921 gaacttactg aagagccaaa gaacactgag tcgagttgaa ctgaaaaggt tgtgtgagat
1981 cttcactcgg atgtttgctg accctcatag caagagagtt ttcagtatgt ttttggagac
2041 tcttgtggat tttataataa ttcataagga tgatttacaa gactggcttt ttgttcttct
2101 cacacaatta cttaagaaaa tgggagcaga tttacttgga tctgtgcaag caaaagttca
2161 aaaggctcta gatgtcacaa gggactcctt tccatttgat caacaattta acattttgat
2221 gagatttatt gtggatcaaa ctcaaactcc aaacctcaag gtcgaagttg caatcctgaa
2281 atacattgag tctctggcca gacagatgga tccaacagat tttgtaaact ctagtgagac
2341 aaggcttgct gtttctagaa tcataacctg gacaacagaa ccaaagagtt cagacgtgag
2401 aaaggcagca cagattgtgc taatctctct gtttgaattg aatactcctg aatttaccat
2461 gttacttggt gccttgccaa aaacattcca ggatggtgcc accaaactcc tgcacaacca
2521 cctcaagaat tccagtaaca ccagtgtggg ctctccaagc aatacgattg gccggacgcc
2581 ctcccgacac accagcagca ggaccagccc cctgacctca cccaccaact gttcccatgg
2641 gggtctgtct ccaagcatgc tggactatga tacagagaac ctgaactctg aagaaatcta
2701 tagttctcta cgtggagtta cagaagccat tgaaaagttt agttttcgaa gccaagaaga
2761 tctgaatgag ccaattaaac gagatggcaa taaggagtgt gatattgtgt cccgcgatgg
2821 gggcgctgcc tcccctgcca ctgagggccg ggggggtagt gaagtagaag gaggccggac
2881 agctctggat aacaagacct cactactcaa cacccagcct ccgcgcgcct tcccggggcc
2941 gcgggcgcga gactacaacc cgtaccccta ctcagatgcc atcaacacct acgacaagac
3001 cgccctgaaa gaggctgtgt tcgatgacga catggagcag cttcgagacg tgcccatcga
3061 ccattctgac ctggtggctg accttctgaa agagctgtcc aaccacaatg agcgagtgga
3121 ggaacggaag ggagccctgc tggagctgct caagatcacg cgggaagaca gccttggtgt
3181 ctgggaggag cacttcaaga ccattctgct cctgctgctg gagacccttg gagacaaaga
3241 ccattcaatt cgagcactgg cgttaagagt tttgagggaa attctgagaa atcaaccagc
3301 aagatttaaa aactacgccg agctgacgat tatgaagact ctggaagccc acaaagactc
3361 ccataaggag gtggtgagag cggctgagga ggctgcgtcc acactggcca gttccatcca
3421 cccggagcag tgcatcaagg tgctctgtcc catcatccag acggccgact accccatcaa
3481 ccttgctgcc atcaagatgc agaccaaagt cgtcgagagg atcgcaaagg agtcattgct
3541 gcagctcctt gtcgacatca tcccaggctt gctgcagggt tatgacaaca ccgaaagtag
3601 tgtgcgtaag gccagcgtgt tttgcttagt ggcaatttat tccgtaatcg gagaagacct
3661 gaaacctcac cttgcacagc tcacagggag caagatgaag ctactaaact tatacataaa
3721 gagggcccag accaccaaca gcaacagcag ctcctcctcc gatgtctcca cgcacagcta
3781 atggcagtac ctgtctcttg tgtagaccta gaagcaatcg gtggtgcctc tcagagacct
3841 ttccccaccc ccttcatcgg ctgcccagtc agtacaagga ggcccacaaa tatttattac
3901 aatcagtatt ttggtccctt ccagcttttc tgtagaatct tactg
//