LOCUS AK297257 2044 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ59341 complete cds, highly similar to Homo
sapiens sphingomyelin phosphodiesterase 4, neutral membrane,
transcript variant 1, mRNA.
ACCESSION AK297257
VERSION AK297257.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2044)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2044
/clone="FCBBF3004778"
/clone_lib="FCBBF3"
/db_xref="H-InvDB:HIT000491881"
/db_xref="taxon:9606"
/dev_stage="fetal"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 9..1856
/codon_start=1
/note="highly similar to Homo sapiens sphingomyelin
phosphodiesterase 4, neutral membrane, transcript variant
1, mRNA"
/protein_id="BAG59735.1"
/transl_table=1
/translation="MTTFGAVAEWRLPSLRRATLWIPQWFAKKAIFNSPLEAAMAFPH
LQQPSFLLASLKADSINKPFAQQCQDLVKVIEDFPAKVFVEMWLHHYSLEMYQKMQSP
HAKESFTPTEEHVLVVRLLLKHLHAFANSLKPEQASPSAHSHATSPLEEFKRAAVPRF
VQQKLYLFLQHCFGHWPLDASFRAVLEMWLSYLQPWRYAPDKQAPGSDSQPRCVSEKW
APFVQENLLMYTKLFVGFLNRALRTDLVSPKHALMVFRVAKVFAQPNLAEMIQKGEQL
FLEPELVIPHRQHRLFTAPTFTGSFLSPWPPAVTDASFKVKSHVYSLEGQDCKYTPMF
GPEARTLVLRLAQLITQAKHTAKSISDQCAESPAGHSFLSWLGFSSMDTNGSYTANDL
DEMGQDSVRKTDEYLEKALEYLRQIFRLSEAQLRQFTLALGTTQDENGKKQLPDCIVG
EDGLILTPLGRYQIINGLRRFEIEYQGDPELQPIRSYEIASLVRTLFRLSSAINHRFA
GQMAALCSRDDFLGSFCRYHLTEPGLASRHLLSPVGRRQVAGHTRGPRLSLRFLGSYR
TLVSLLLAFFVASLFCVGPLPCTLLLTLGYVLYASAMTLLTERGKLHQP"
BASE COUNT 406 a 653 c 579 g 406 t
ORIGIN
1 gcagcttgat gacgactttc ggcgccgtgg cggaatggcg gcttccatct ctgaggcgag
61 cgacgctatg gatcccacag tggtttgcta agaaggccat tttcaactct ccactggagg
121 ctgctatggc gttccctcac ctgcagcagc ccagctttct actggctagc ctgaaagctg
181 actctataaa taagcccttt gcacagcagt gccaagactt ggttaaagtc attgaggact
241 ttccagcaaa ggtttttgtt gaaatgtggc ttcatcacta ttccttggag atgtatcaaa
301 aaatgcagtc ccctcatgcc aaggagtcgt tcacgcctac tgaggagcat gtgttggtgg
361 tgcgcctgct gctgaagcac ctgcacgcct ttgccaacag cctgaagcca gagcaggcct
421 caccctccgc ccactcccac gccaccagcc ccctggagga gttcaaacgg gctgctgtcc
481 cgaggttcgt ccagcagaaa ctctacctct tcttgcagca ttgctttggc cactggcccc
541 tggacgcatc gttcagagct gtcctggaga tgtggctgag ctacctgcag ccgtggcggt
601 acgcgcctga caagcaggct ccgggcagcg actcccagcc ccggtgtgtg tcggagaaat
661 gggcaccctt tgtccaggag aacctgctga tgtacaccaa gttgtttgtg ggctttctga
721 accgcgcgct ccgcacagac ctggtcagcc ccaagcacgc gctcatggtg ttccgagtgg
781 ccaaagtctt tgcccagccc aacctggctg agatgattca gaaaggtgag cagctattcc
841 tggagccaga gctggtcatc ccccaccgcc agcaccgact cttcacggcc cccacattca
901 ctgggagctt cctgtcaccc tggccaccag cggtcactga tgcctccttc aaggtgaaga
961 gccacgtcta cagcctggag ggccaggact gcaagtacac cccgatgttt gggcccgagg
1021 cccgcaccct ggtcctgcgc ctcgctcagc tcatcacaca ggccaaacac acagccaagt
1081 ccatctccga ccagtgtgcg gagagcccgg ctggccactc cttcctctca tggctgggct
1141 ttagctccat ggacaccaat ggctcctaca cagccaacga cctggacgag atggggcaag
1201 acagtgtccg gaagacagat gaatacctgg agaaggccct ggagtacctg cgccagatat
1261 tccggctcag cgaagcgcag ctcaggcagt tcacactcgc cttgggcacc acccaggatg
1321 agaatggaaa aaagcaactc cccgactgca tcgtgggtga ggacggactc atccttacgc
1381 ccctggggcg gtaccagatc atcaatgggc tgcgaaggtt tgaaattgag taccaggggg
1441 acccggagct gcagcccatc cggagctatg agatcgccag cttggtccgc acactcttta
1501 ggctgtcgtc tgccatcaac cacagatttg caggacagat ggcggctctg tgttcccggg
1561 atgacttcct cggcagcttc tgtcgctacc acctcacaga acctgggctg gccagcaggc
1621 acctgctgag ccctgtgggg cggaggcagg tggccggcca cacccgcggc cccaggctca
1681 gcctgcgctt cctgggcagt taccggacgc tggtctcgct gctgctggcc ttcttcgtgg
1741 cctctctgtt ctgcgtcggg cccctcccat gcacgctgct gctcaccctg ggctatgtcc
1801 tctacgcctc tgccatgaca ctgctgaccg agcgggggaa gctgcaccag ccctgaaggt
1861 gtcagctgcc ttcagagcag gctggaggga tttgccacac agccccaccc ttgggctgag
1921 aggacctggg aagcccctcc aggagggaac acggtcatcc tcgggcttct ggagcggggt
1981 tcctgcagcc gcagaggcat ctggaggaaa cgcaaccaag aaaggaaggc aggtgggccc
2041 ctgc
//