LOCUS AK297221 3186 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ55893 complete cds, moderately similar to Mus
musculus sushi, von Willebrand factor type A, EGF and pentraxin
domain containing 1, mRNA.
ACCESSION AK297221
VERSION AK297221.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3186)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3186
/clone="FCBBF3001432"
/clone_lib="FCBBF3"
/db_xref="H-InvDB:HIT000491845"
/db_xref="taxon:9606"
/dev_stage="fetal"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 90..2909
/codon_start=1
/note="moderately similar to Mus musculus sushi, von
Willebrand factor type A, EGF and pentraxin domain
containing 1, mRNA"
/protein_id="BAG59704.1"
/transl_table=1
/translation="MAAAALGWDRLPGDPGNGTGASCLQRAFSCNAGEFLDMKDQSCK
PCAEGRYSLGTGIRFDEWDELPHGFASLSANMELDDSAAESTGNCTSSKWVPRGDYIA
SNTDECTATLMYAVNLKQSGTVNFEYYYPDSSIIFEFFVQNDQCQPNADDSRWMKTTE
KGWEFHSVELNRGNNVLYWRTTAFSVWTKVPKPVLVRNIAITGVAHTSECFPCKPGTY
ADKQGSSFCKLCPANSYSNKGETSCHQCDPDKYSEKGSSSCNVRPACTDKDYFYTHTA
CDANGETQLMYKWAKPKICSEDLEGAVKLPASGVKTHCPPCNPGFFKTNNSTCQPCPY
GSYSNGSDCTRCPAGTEPAVGFEYKWWNTLPTNMETTVLSGINFEYKGMTGWEVAGDH
IYTAAGASDNDFMILTLVVPGFRPPQSVMADTENKEVARITFVFETLCSVNCELYFMV
GVNSRTNTPVETWKGSKGKQSYTYIIEENTTTSFTWAFQRTTFHEASRKYTNDVAKIY
SINVTNVMNGVASYCRPCALEASDVGSSCTSCPAGYYIDRDSGTCHSCPPNTILKAHQ
PYGVQACVPCGPGTKNNKIHSLCYNDCTFSRNTPTRTFNYNFSALANTVTLAGGPSFT
SKGLKYFHHFTLSLCGNQGRKMSVCTDNVTDLRIPEGESGFSKSITAYVCQAVIIPPE
VTGYKAGVSSQPVSLADRLIGVTTDMTLDGITSPAELFHLESLGIPDVIFFYRSNDVT
QSCSSGRSTTIRVRCSPQKTVPGSLLLPGTCSDGTCDGCNFHFLWESAAACPLCSVAD
YHAIVSSCVAGIQKTTYVWREPKLCSGGISLPEQRVTICKTIDFWLKVGISAGTCTAI
LLTVLTYYFWKKNQKLEYKYSKLVMNATLKDCDLPAADSCAIMEGEDVEDDLIFTSKK
SLFGKIKSFTSKQPAPVTISLSEDS"
BASE COUNT 780 a 909 c 763 g 734 t
ORIGIN
1 actcaggaca acgctatggc tgagcctggg cacagccacc atctctccgc cagagtcagg
61 ggaagaactg agaggcgcat accccggcta tggcggctgc tgctctgggc tgggaccgcc
121 ttccaggtga cccagggaac gggaccggag cttcatgcct gcaaagagcc ttctcctgca
181 acgccgggga gtttctggat atgaaggacc agtcatgtaa gccatgcgct gagggccgct
241 actccctcgg cacaggcatt cggtttgatg agtgggatga gctgccccat ggctttgcca
301 gcctctcagc caacatggag ctggatgaca gtgctgctga gtccaccggg aactgtactt
361 cgtccaagtg ggttccccgg ggcgactaca tcgcctccaa cacggacgaa tgcacagcca
421 cactgatgta cgccgtcaac ctgaagcaat ctggcaccgt taacttcgaa tactactatc
481 cagactccag catcatcttt gagtttttcg ttcagaatga ccagtgccag cccaatgcag
541 atgactccag gtggatgaag accacagaga aaggatggga attccacagt gtggagctaa
601 atcgaggcaa taatgtcctc tattggagaa ccacagcctt ctcagtatgg accaaagtac
661 ccaagcctgt gctggtgaga aacattgcca taacaggggt ggcccacact tcagaatgct
721 tcccctgcaa acctggcacg tatgcagaca agcagggctc ctctttctgc aaactttgcc
781 cagccaactc ttattcaaat aaaggagaaa cttcttgcca ccagtgtgac cctgacaaat
841 actcagagaa aggatcttct tcctgtaacg tgcgcccagc ttgcacagac aaagattatt
901 tctacacaca cacggcctgc gatgccaacg gagagacaca actcatgtac aaatgggcca
961 agccgaaaat ctgtagcgag gaccttgagg gggcagtgaa gctgcctgcc tctggtgtga
1021 agacccactg cccaccctgc aacccaggct tcttcaaaac caacaacagc acctgccagc
1081 cctgcccata tggttcctac tccaatggct cagactgtac ccgctgccct gcagggactg
1141 aacctgctgt gggatttgaa tacaaatggt ggaacacgct gcccacaaac atggaaacga
1201 ccgttctcag tgggatcaac ttcgagtaca agggcatgac aggctgggag gtggctggtg
1261 atcacattta cacagctgct ggagcctcag acaatgactt catgattctc actctggttg
1321 tgccaggatt tagacctccg cagtcggtga tggcagacac agagaataaa gaggtggcca
1381 gaatcacatt tgtctttgag accctctgtt ctgtgaactg tgagctctac ttcatggtgg
1441 gtgtgaattc taggaccaac actcctgtgg agacgtggaa aggttccaaa ggcaaacagt
1501 cctataccta catcattgag gagaacacta ccacgagctt cacctgggcc ttccagagga
1561 ccacttttca tgaggcaagc aggaagtaca ccaatgacgt tgccaagatc tactccatca
1621 atgtcaccaa tgttatgaat ggcgtggcct cctactgccg tccctgtgcc ctagaagcct
1681 ctgatgtggg ctcctcctgc acctcttgtc ctgctggtta ctatattgac cgagattcag
1741 gaacctgcca ctcctgcccc cctaacacaa ttctgaaagc ccaccagcct tatggtgtcc
1801 aggcctgtgt gccctgtggt ccagggacca agaacaacaa gatccactct ctgtgctaca
1861 atgattgcac cttctcacgc aacactccaa ccaggacttt caactacaac ttctccgctt
1921 tggcaaacac cgtcactctt gctggagggc caagcttcac ttccaaaggg ttgaaatact
1981 tccatcactt taccctcagt ctctgtggaa accagggtag gaaaatgtct gtgtgcaccg
2041 acaatgtcac tgacctccgg attcctgagg gtgagtcagg gttctccaaa tctatcacag
2101 cctacgtctg ccaggcagtc atcatccccc cagaggtgac aggctacaag gccggggttt
2161 cctcacagcc tgtcagcctt gctgatcgac ttattggggt gacaacagat atgactctgg
2221 atggaatcac ctccccagct gaacttttcc acctggagtc cttgggaata ccggacgtga
2281 tcttctttta taggtccaat gatgtgaccc agtcctgcag ttctgggaga tcaaccacca
2341 tccgcgtcag gtgcagtcca cagaaaactg tccctggaag tttgctgctg ccaggaacgt
2401 gctcagatgg gacctgtgat ggctgcaact tccacttcct gtgggagagc gcggctgctt
2461 gcccgctctg ctcagtggct gactaccatg ctatcgtcag cagctgtgtg gctgggatcc
2521 agaagactac ttacgtgtgg cgagaaccca agctatgctc tggtggcatt tctctgcctg
2581 agcagagagt caccatctgc aaaaccatag atttctggct gaaagtgggc atctctgcag
2641 gcacctgtac tgccatcctg ctcaccgtct tgacctacta cttttggaaa aagaatcaaa
2701 aactagagta caagtactcc aagctggtga tgaatgctac tctcaaggac tgtgacctgc
2761 cagcagctga cagctgcgcc atcatggaag gcgaggatgt agaggacgac ctcatcttta
2821 ccagcaagaa gtcactcttt gggaagatca aatcatttac ctccaagcag ccagctcctg
2881 tcaccatctc tctttcagag gactcctgat ggatttgact cagtgccgct gaagacatcc
2941 tcaggaggcc cagacatgga cctgtgagag gcactgcctg cctcacctgc ctcctcacct
3001 tgcatagcac ctttgcaagc ctgcggcgat ttgggtgcca gcatcctgca acacccactg
3061 ctggaaatct cttcattgtg gccttatcag atgtttgaat ttcagatctt tttttataga
3121 gtacccaaac cctcctttct gcttgcctca aacctgccaa atatacccac actttgtttg
3181 taaatt
//