LOCUS AK297119 2846 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ54020 complete cds, highly similar to
Heterogeneous nuclear ribonucleoprotein U.
ACCESSION AK297119
VERSION AK297119.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2846)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2846
/cell_type="normal dermal fibroblasts (Neonatal Skin)
(NHDF2564)"
/clone="DFNES2005604"
/clone_lib="DFNES2"
/db_xref="H-InvDB:HIT000491743"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="primary culture, normal dermal fibroblasts"
/organism="Homo sapiens"
CDS 176..2530
/codon_start=1
/note="highly similar to Heterogeneous nuclear
ribonucleoprotein U"
/protein_id="BAG59625.1"
/transl_table=1
/translation="MSSSPVNVKKLKVSELKEELKKRRLSDKGLKAELMERLQAALDD
EEAGGRPAMEPGNGSLDLGGDSAGRSGAGLEQEAAAGGDEEEEEEEEEEEGISALDGD
QMELGEENGDDQGFQEGEDELGDEEEGAGDENGHGEQQPQPPATQQQQPQQQRGAAKE
AAGKSSGPTSLFAVTVAPPGARQGQQQAGGDGKTEQKGGDKKRGVKRPREDHGRGYFE
YIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFKISRDRLSASSLTMESFA
FLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVRIGWSLTTSGMLLGEE
EFSYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFESDEVELSYAKNGQDLGVAFK
ISKEVLAGRPLFPHVLCHNCAVEFNFGQKEKPYFPIPEEYTFIQNVPLEDRVRGPKGP
EEKKDCEVVMMIGLPGAGKTTWVTKHAAENPGKYNILGTNTIMDKMMVAGFKKQMADT
GKLNTLLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVC
PKDEDYKQRTQKKAEVEGKDLPEHAVLKMKGNFTLPEVAECFDEITYVELQKEEAQKL
LEQYKEESKKALPPEKKQNTGSKKSNKNKSGKNQFNRGGGHRGRGGFNMRGGNFRGGA
PGNRGGYNRRGNMPQRGGGGGGSGGIGYPYPRAPVFPGRGSYSNRGNYNRGGMPNRGN
YNQNFRGRGNNRGYKNQSQGYNQWQQGQFWGQKPWSQHYHQGYY"
BASE COUNT 855 a 572 c 806 g 613 t
ORIGIN
1 aaaggaattg gcgccgttcg acaccaggcg gatccgctct gcagcacgaa cccatctcca
61 gccgcagccg cagccgccgc ccgggccgag gagcagccgc agcagccgcc accagtggcc
121 gagtgagcgg agccgagttt gaggcagcgc ctagcggtga atcggggccc tcaccatgag
181 ttcctcgcct gttaatgtaa aaaagctgaa ggtgtcggag ctgaaagagg agctcaagaa
241 gcgacgcctt tctgacaagg gtctcaaggc cgagctcatg gagcgactcc aggctgcgct
301 ggacgacgag gaggccgggg gccgccccgc catggagccc gggaacggca gcctagacct
361 gggcggggat tccgctgggc gctcgggagc aggcctcgag caggaggccg cggccggcgg
421 cgatgaagag gaggaggaag aggaagagga ggaggaagga atctccgctc tggacggcga
481 ccagatggag ctaggagagg agaacggcga cgatcagggt ttccaggaag gggaagatga
541 gctcggggac gaagaggaag gcgcgggcga cgagaacggg cacggggagc agcagcctca
601 accgccggcg acgcagcagc aacagcccca acagcagcgc ggggccgcca aggaggccgc
661 ggggaagagc agcggcccca cctcgctgtt cgcggtgacg gtggcgccgc ccggggcgag
721 gcagggccag cagcaggcgg gaggggacgg caaaacagaa cagaaaggcg gagataaaaa
781 gaggggtgtt aaaagaccac gagaagatca tggccgtgga tattttgagt acattgaaga
841 gaacaagtat agcagagcca aatctcctca gccacctgtt gaagaagaag atgaacactt
901 cgatgacaca gtggtttgtc ttgatactta taattgtgat ctacatttta aaatatcaag
961 agatcgtctc agtgcttctt cccttacaat ggagagtttt gcttttcttt gggctggagg
1021 aagagcatcc tatggtgtgt caaaaggcaa agtgtgtttt gagatgaagg ttacagagaa
1081 gatcccagta aggcatttat atacaaaaga tattgacata catgaagttc gtattggctg
1141 gtcactaact acaagtggaa tgttacttgg tgaagaagaa ttttcttatg ggtattctct
1201 aaaaggaata aaaacatgca actgtgagac tgaagattat ggagaaaagt ttgatgaaaa
1261 tgatgtgatt acatgttttg ctaactttga aagtgatgaa gtagaactct cgtatgctaa
1321 gaatggacaa gatcttggcg ttgccttcaa aatcagtaag gaagttcttg ctggacggcc
1381 actgttcccg catgttctct gccacaactg tgcagttgaa tttaattttg gtcagaagga
1441 aaagccatat tttccaatac ctgaagagta tactttcatc cagaacgtcc ccttagagga
1501 tcgagttaga ggaccaaagg ggcctgaaga gaagaaagat tgtgaagttg tgatgatgat
1561 tggcttgcca ggagctggaa aaactacctg ggttactaaa catgcagcag aaaatccagg
1621 gaaatataac attcttggca caaatactat tatggataag atgatggtgg caggttttaa
1681 gaagcaaatg gcagatactg gaaaactgaa cacactgttg cagagagccc cccagtgtct
1741 tgggaaattt attgagattg ctgcccgaaa gaagcgaaat tttattctgg atcagacaaa
1801 tgtgtctgct gctgcccaga ggagaaaaat gtgcctgttt gcaggcttcc agcgaaaagc
1861 tgttgtagtt tgcccaaaag atgaagacta taagcaaaga acacagaaga aagcagaagt
1921 agaggggaaa gacctaccag aacatgcggt cctcaaaatg aaaggaaact ttaccctccc
1981 agaggtagct gagtgctttg atgaaataac ctatgttgaa cttcagaagg aagaagccca
2041 aaaactcttg gagcaatata aggaagaaag caaaaaggct cttccaccag aaaagaaaca
2101 gaacactggc tcaaagaaaa gcaataaaaa taagagtggc aagaaccagt ttaacagagg
2161 tggtggccat agaggacgtg ggggattcaa tatgcgtggt ggaaatttca gaggaggagc
2221 ccctgggaat cgtggcggat ataataggag gggcaacatg ccacagagag gtggtggcgg
2281 tggaggaagt ggtggaatcg gctatccata ccctcgtgcc cctgtttttc ctggccgtgg
2341 tagttactca aacagaggga actacaacag aggtggaatg cccaacagag ggaactacaa
2401 ccagaacttc agaggacgag gaaacaatcg tggctacaaa aatcaatctc agggctacaa
2461 ccagtggcag cagggtcaat tctggggtca gaagccatgg agtcagcatt atcaccaagg
2521 atattattga atacccaaat aaaacgaact gatacatatt tctccaaaac cttcacaaga
2581 agtcgactgt tttctttagt aggctaactt tttaaacatt ccacaagagg aagtgcctgc
2641 gggttccttt tttagaagct ttgtgggttg attttttttc ttttcttttt tgtacatttt
2701 taattgcagt ttaaaagtga atcgtaagag aacctcagca ttgtgcacga taagagaatg
2761 tgtcagtatt tcagggttct acattttatc tgtaaaatgt gacttttttt tttttttatc
2821 acaacagaag taaaatgttg ctttgt
//