LOCUS AK296968 2746 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ50795 complete cds, highly similar to
Cadherin-3 precursor.
ACCESSION AK296968
VERSION AK296968.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2746)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2746
/clone="CTONG3005556"
/clone_lib="CTONG3"
/db_xref="H-InvDB:HIT000491592"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="tumor tissue"
/organism="Homo sapiens"
/tissue_type="tongue, tumor tissue"
CDS 130..2454
/codon_start=1
/note="highly similar to Cadherin-3 precursor"
/protein_id="BAG59512.1"
/transl_table=1
/translation="MGCPGQEPALFSTDNDDFTVRNGETVQERRSLKERNPLKIFPSK
RILRRHKRDWVVAPISVPENGKGPFPQRLNQLKSNKDRDTKIFYSITGPGADSPPEGV
FAVEKETGWLLLNKPLDREEIAKYELFGHAVSENGASVEDPMNISIIVTDQNDHKPKF
TQDTFRGSVLEGVLPGTSVMQVTATDEDDAIYTYNGVVAYSIHSQEPKDPHDLMFTIH
RSTGTISVISSGLDREKVPEYTLTIQATDMDGDGSTTTAVAVVEILDANDNAPMFDPQ
KYEAHVPENAVGHEVQRLTVTDLDAPNSPAWRATYLIMGGDDGDHFTITTHPESNQGI
LTTRKGLDFEAKNQHTLYVEVTNEAPFVLKLPTSTATIVVHVEDVNEAPVFVPPSKVV
EVQEGIPTGEPVCVYTAEDPDKENQKISYRILRDPAGWLAMDPDSGQVTAVGTLDRED
EQFVRNNIYEVMVLAMDNGSPPTTGTGTLLLTLIDVNDHGPVPEPRQITICNQSPVRH
VLNITDKDLSPHTSPFQAQLTDDSDIYWTAEVNEEGDTVVLSLKKFLKQDTYDVHLSL
SDHGNKEQLTVIRATVCDCHGHVETCPGPWKGGFILPVLGAVLALLFLLLVLLLLVRK
KRKIKEPLLLPEDDTRDNVFYYGEEGGGEEDQDYDITQLHRGLEARPEVVLRNDVAPT
IIPTPMYRPRPANPDEIGNFIIENLKAANTDPTAPPYDTLLVFDYEGSGSDAASLSSL
TSSASDQDQDYDYLNEWGSRFKKLADMYGGGEDD"
BASE COUNT 661 a 801 c 748 g 536 t
ORIGIN
1 gcggtgctca aaggggcaag agctgagcgg aacaccggcc cgccgtcgcg gcagctgctt
61 cacccctctc tctgcagcca tggggctccc tcgtggacct ctcgcgtctc tcctccttct
121 ccagtattca tgggctgccc tgggcaagag ccagctctgt ttagcactga taatgatgac
181 ttcactgtgc ggaatggcga gacagtccag gaaagaaggt cactgaagga aaggaatcca
241 ttgaagatct tcccatccaa acgtatctta cgaagacaca agagagattg ggtggttgct
301 ccaatatctg tccctgaaaa tggcaagggt cccttccccc agagactgaa tcagctcaag
361 tctaataaag atagagacac caagattttc tacagcatca cggggccggg ggcagacagc
421 ccccctgagg gtgtcttcgc tgtagagaag gagacaggct ggttgttgtt gaataagcca
481 ctggaccggg aggagattgc caagtatgag ctctttggcc acgctgtgtc agagaatggt
541 gcctcagtgg aggaccccat gaacatctcc atcatcgtga ccgaccagaa tgaccacaag
601 cccaagttta cccaggacac cttccgaggg agtgtcttag agggagtcct accaggtact
661 tctgtgatgc aggtgacagc cacagatgag gatgatgcca tctacaccta caatggggtg
721 gttgcttact ccatccatag ccaagaacca aaggacccac acgacctcat gttcacaatt
781 caccggagca caggcaccat cagcgtcatc tccagtggcc tggaccggga aaaagtccct
841 gagtacacac tgaccatcca ggccacagac atggatgggg acggctccac caccacggca
901 gtggcagtag tggagatcct tgatgccaat gacaatgctc ccatgtttga cccccagaag
961 tacgaggccc atgtgcctga gaatgcagtg ggccatgagg tgcagaggct gacggtcact
1021 gatctggacg cccccaactc accagcgtgg cgtgccacct accttatcat gggcggtgac
1081 gacggggacc attttaccat caccacccac cctgagagca accagggcat cctgacaacc
1141 aggaagggtt tggattttga ggccaaaaac cagcacaccc tgtacgttga agtgaccaac
1201 gaggcccctt ttgtgctgaa gctcccaacc tccacagcca ccatagtggt ccacgtggag
1261 gatgtgaatg aggcacctgt gtttgtccca ccctccaaag tcgttgaggt ccaggagggc
1321 atccccactg gggagcctgt gtgtgtctac actgcagaag accctgacaa ggagaatcaa
1381 aagatcagct accgcatcct gagagaccca gcagggtggc tagccatgga cccagacagt
1441 gggcaggtca cagctgtggg caccctcgac cgtgaggatg agcagtttgt gaggaacaac
1501 atctatgaag tcatggtctt ggccatggac aatggaagcc ctcccaccac tggcacggga
1561 acccttctgc taacactgat tgatgtcaac gaccatggcc cagtccctga gccccgtcag
1621 atcaccatct gcaaccaaag ccctgtgcgc cacgtgctga acatcacgga caaggacctg
1681 tctccccaca cctccccttt ccaggcccag ctcacagatg actcagacat ctactggacg
1741 gcagaggtca acgaggaagg tgacacagtg gtcttgtccc tgaagaagtt cctgaagcag
1801 gatacatatg acgtgcacct ttctctgtct gaccatggca acaaagagca gctgacggtg
1861 atcagggcca ctgtgtgcga ctgccatggc catgtcgaaa cctgccctgg accctggaaa
1921 ggaggtttca tcctccctgt gctgggggct gtcctggctc tgctgttcct cctgctggtg
1981 ctgcttttgt tggtgagaaa gaagcggaag atcaaggagc ccctcctact cccagaagat
2041 gacacccgtg acaacgtctt ctactatggc gaagaggggg gtggcgaaga ggaccaggac
2101 tatgacatca cccagctcca ccgaggtctg gaggccaggc cggaggtggt tctccgcaat
2161 gacgtggcac caaccatcat cccgacaccc atgtaccgtc ctaggccagc caacccagat
2221 gaaatcggca actttataat tgagaacctg aaggcggcta acacagaccc cacagccccg
2281 ccctacgaca ccctcttggt gttcgactat gagggcagcg gctccgacgc cgcgtccctg
2341 agctccctca cctcctccgc ctccgaccaa gaccaagatt acgattatct gaacgagtgg
2401 ggcagccgct tcaagaagct ggcagacatg tacggtggcg gggaggacga ctaggcggcc
2461 tgcctgcagg gctggggacc aaacgtcagg ccacagagca tctccaaggg gtctcagttc
2521 ccccttcagc tgaggacttc ggagcttgtc aggaagtggc cgtagcaact tggcggagac
2581 aggctatgag tctgacgtta gagtggttgc ttccttagcc tttcaggatg gaggaatgtg
2641 ggcagtttga cttcagcact gaaaacctct ccacctgggc cagggttgcc tcagaggcca
2701 agtttccaga agcctcttac ctgccgtaaa atgctcaacc ctgtgt
//