LOCUS AK296831 2677 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ57316 complete cds, highly similar to DNA
mismatch repair protein Msh2.
ACCESSION AK296831
VERSION AK296831.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2677)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2677
/clone="CTONG2017840"
/clone_lib="CTONG2"
/db_xref="H-InvDB:HIT000491455"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="tumor tissue"
/organism="Homo sapiens"
/tissue_type="tongue, tumor tissue"
CDS 357..2405
/codon_start=1
/note="highly similar to DNA mismatch repair protein Msh2"
/protein_id="BAG59401.1"
/transl_table=1
/translation="MNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDF
SQYMKLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKN
RIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGIN
QLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQVENHEFLV
KPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCK
EEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISS
GYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILKASRHACVEV
QDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEV
SIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGF
GLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVK
KGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQYIGESQGYDIMEPAAKKCYLE
REQGEKIIQEFLSKVKQMPFTEMSEENITIKLKQLKAEVIAKNNSFVNEIISRIKVTT
"
BASE COUNT 855 a 471 c 598 g 753 t
ORIGIN
1 cttttcttca accaggaggt gaggaggttt cgacatggcg gtgcagccga aggagacgct
61 gcagttggag agcgcggccg aggtcggctt cgtgcgcttc tttcagggca tgccggagaa
121 gccgaccacc acagtgcgcc ttttcgaccg gggcgacttc tatacggcgc acggcgagga
181 cgcgctgctg gccgcccggg aggtgttcaa gacccagggg gtgatcaagt acatggggcc
241 ggcaggagca aagaatctgc agagtgttgt gcttagtaaa atgaattttg aatcttttgt
301 aaaagatctt cttctggttc gtcagtatag agttgaaagg caaaaaggga gagcagatga
361 atagtgctgt attgccagaa atggagaatc aggttgcagt ttcatcactg tctgcggtaa
421 tcaagttttt agaactctta tcagatgatt ccaactttgg acagtttgaa ctgactactt
481 ttgacttcag ccagtatatg aaattggata ttgcagcagt cagagccctt aacctttttc
541 agggttctgt tgaagatacc actggctctc agtctctggc tgccttgctg aataagtgta
601 aaacccctca aggacaaaga cttgttaacc agtggattaa gcagcctctc atggataaga
661 acagaataga ggagagattg aatttagtgg aagcttttgt agaagatgca gaattgaggc
721 agactttaca agaagattta cttcgtcgat tcccagatct taaccgactt gccaagaagt
781 ttcaaagaca agcagcaaac ttacaagatt gttaccgact ctatcagggt ataaatcaac
841 tacctaatgt tatacaggct ctggaaaaac atgaaggaaa acaccagaaa ttattgttgg
901 cagtttttgt gactcctctt actgatcttc gttctgactt ctccaagttt caggaaatga
961 tagaaacaac tttagatatg gatcaggtgg aaaaccatga attccttgta aaaccttcat
1021 ttgatcctaa tctcagtgaa ttaagagaaa taatgaatga cttggaaaag aagatgcagt
1081 caacattaat aagtgcagcc agagatcttg gcttggaccc tggcaaacag attaaactgg
1141 attccagtgc acagtttgga tattactttc gtgtaacctg taaggaagaa aaagtccttc
1201 gtaacaataa aaactttagt actgtagata tccagaagaa tggtgttaaa tttaccaaca
1261 gcaaattgac ttctttaaat gaagagtata ccaaaaataa aacagaatat gaagaagccc
1321 aggatgccat tgttaaagaa attgtcaata tttcttcagg ctatgtagaa ccaatgcaga
1381 cactcaatga tgtgttagct cagctagatg ctgttgtcag ctttgctcac gtgtcaaatg
1441 gagcacctgt tccatatgta cgaccagcca ttttggagaa aggacaagga agaattatat
1501 taaaagcatc caggcatgct tgtgttgaag ttcaagatga aattgcattt attcctaatg
1561 acgtatactt tgaaaaagat aaacagatgt tccacatcat tactggcccc aatatgggag
1621 gtaaatcaac atatattcga caaactgggg tgatagtact catggcccaa attgggtgtt
1681 ttgtgccatg tgagtcagca gaagtgtcca ttgtggactg catcttagcc cgagtagggg
1741 ctggtgacag tcaattgaaa ggagtctcca cgttcatggc tgaaatgttg gaaactgctt
1801 ctatcctcag gtctgcaacc aaagattcat taataatcat agatgaattg ggaagaggaa
1861 cttctaccta cgatggattt gggttagcat gggctatatc agaatacatt gcaacaaaga
1921 ttggtgcttt ttgcatgttt gcaacccatt ttcatgaact tactgccttg gccaatcaga
1981 taccaactgt taataatcta catgtcacag cactcaccac tgaagagacc ttaactatgc
2041 tttatcaggt gaagaaaggt gtctgtgatc aaagttttgg gattcatgtt gcagagcttg
2101 ctaatttccc taagcatgta atagagtgtg ctaaacagaa agccctggaa cttgaggagt
2161 ttcagtatat tggagaatcg caaggatatg atatcatgga accagcagca aagaagtgct
2221 atctggaaag agagcaaggt gaaaaaatta ttcaggagtt cctgtccaag gtgaaacaaa
2281 tgccctttac tgaaatgtca gaagaaaaca tcacaataaa gttaaaacag ctaaaagctg
2341 aagtaatagc aaagaataat agctttgtaa atgaaatcat ttcacgaata aaagttacta
2401 cgtgaaaaat cccagtaatg gaatgaaggt aatattgata agctattgtc tgtaatagtt
2461 ttatattgtt ttatattaac cctttttcca tagtgttaac tgtcagtgcc catgggctat
2521 caacttaata agatatttag taatatttta ctttgaggac attttcaaag atttttattt
2581 tgaaaaatga gagctgtaac tgaggactgt ttgcaattga cataggcaat aataagtgat
2641 gtgctgaatt ttataaataa aatcatgtag tttgtgg
//