LOCUS AK296776 2404 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ57524 complete cds, highly similar to
Plexin-B1 precursor.
ACCESSION AK296776
VERSION AK296776.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2404)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2404
/clone="CTONG2010354"
/clone_lib="CTONG2"
/db_xref="H-InvDB:HIT000491400"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="tumor tissue"
/organism="Homo sapiens"
/tissue_type="tongue, tumor tissue"
CDS 123..2363
/codon_start=1
/note="highly similar to Plexin-B1 precursor"
/protein_id="BAG59355.1"
/transl_table=1
/translation="MPSRHKPGSVFSVEGENLDLAMSKEEVVAMIGDGPCVVKTLTRH
HLYCEPPVEQPLPRHHALREAPDSLSEFTVQMGNLRFSLGHVQYDGESPGAFPVAAQV
GLGVGTSLLALGVIIIVLMYRRKSKQALRDYKKVQIQLENPESSVRDRCKKEFTDLMT
EMTDLTSDLLGSGIPFLDYKVYAERIFFPGHRESPLHRDLGVPESRRPTVEQGLGQLS
NLLNSKLFLTKFIHTLESQRTFSARDRAYVASLLTVALHGKLEYFTDILRTLLSDLVA
QYVAKNPKLMLRRTETVVEKLLTNWMSICLYTFVRDSVGEPLYMLFRGIKHQVDKGPV
DSVTGKAKYTLNDNRLLREDVEYRPLTLNALLAVGPGAGEAQGVPVKILDCDTISQAK
EKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHY
KVPDGATVALVPCLTKHVLRENQDYVPGERTPMLEDVDEGGIRPWHLVKPSDEPEPPR
PRRGSLRGGERERAKAIPEIYLTRLLSMKGTLQKFVDDLFQVVLSTSRPVPLAVKYFF
DLLDEQAQQHGISDQDTIHIWKTNSLPLRFWINIIKNPQFVFDVQTSDNMDAVLLVIA
QTFMDACTLADHKLGRDSPINKLLYARDIPRYKRMVERYYADIRQTVPASDQEMNSVL
AELSWNYSGDLGARVALHELYKYINKYYDQIITALEEDGTAQKMQLGYRLQQIAAAVE
NKVTDL"
BASE COUNT 516 a 698 c 714 g 476 t
ORIGIN
1 acatggttta gttgatggcg caagcccagg tccaaagccc atgctcttct caaacagcca
61 gaggtgactc ccacacgggt catgctgttg tctcctgatc cagccggccc tgccaggtga
121 ccatgccatc ccggcacaag cctgggagtg tgttctccgt ggagggggag aacctggacc
181 ttgcaatgtc caaggaggag gtggtggcta tgatagggga tggcccctgt gtggtgaaga
241 cgctgacgcg gcaccacctg tactgcgagc cccccgtgga gcagcccctg ccacggcacc
301 atgccctccg agaggcacct gactctttgt ctgagttcac ggtgcagatg gggaacttgc
361 gcttctccct gggtcacgtg cagtatgacg gcgagagccc tggggctttt cctgtggcag
421 cccaggtggg cttgggggtg ggcacctctc ttctggctct gggtgtcatc atcattgtcc
481 tcatgtacag gaggaagagc aagcaggccc tgagggacta taagaaggtt cagatccagc
541 tggagaatcc ggagagcagt gtgcgggacc gctgcaagaa ggaattcaca gacctcatga
601 ctgagatgac cgatctcacc agtgacctcc tgggcagcgg catccccttc ctcgactaca
661 aggtgtatgc ggagaggatc ttcttccctg ggcaccgcga gtcgcccttg caccgggacc
721 tgggtgtgcc tgagagcaga cggcccactg tggagcaagg gctggggcag ctctctaacc
781 tgctcaacag caagctcttc ctcaccaagt tcatccacac gctggagagc cagcgcacct
841 tttcagctcg ggaccgtgcc tacgtggcat ctctgctcac cgtggcactg catgggaagc
901 ttgagtattt cactgacatc ctccgcactc tgctcagtga cctggttgcc cagtatgtgg
961 ccaagaaccc caagctgatg ctgcgcagga cagagactgt ggtggagaag ctgctcacca
1021 actggatgtc catctgtctg tataccttcg tgagggactc cgtaggggag cctctgtaca
1081 tgctctttcg agggattaag caccaagtgg ataaggggcc agtggacagt gtgacaggca
1141 aggccaaata caccttgaac gacaaccgcc tgctcagaga ggatgtggag taccgtcccc
1201 tgaccttgaa tgcactattg gctgtggggc ctggggcagg agaggcccag ggcgtgcccg
1261 tgaagatcct agactgtgac accatctccc aggcaaagga gaagatgctg gaccagcttt
1321 ataaaggagt gcctctcacc cagcggccag accctcgcac ccttgatgtt gagtggcggt
1381 ctggggtggc cgggcacctc attctttctg acgaggatgt cacttctgag gtccagggtc
1441 tgtggaggcg cctgaacaca ctgcagcatt acaaggtccc agatggagca actgtggccc
1501 tcgtcccctg cctcaccaag catgtgctcc gggaaaacca ggattatgtc cctggagagc
1561 ggaccccaat gctggaggat gtagatgagg ggggcatccg gccctggcac ctggtgaagc
1621 caagtgatga gccggagccg cccaggcctc ggaggggcag ccttcggggc ggggagcgtg
1681 agcgcgccaa ggccatccct gagatctacc tgacccgcct gctgtccatg aagggcaccc
1741 tgcagaagtt cgtggatgac ctgttccagg tggttctcag caccagccgc cccgtgccgc
1801 tcgctgtgaa gtacttcttt gacctgctgg atgagcaggc ccagcagcat ggcatctccg
1861 accaggacac catccacatc tggaagacca acagcttgcc tctgaggttc tggatcaata
1921 taataaaaaa cccgcagttt gtgttcgacg tgcaaacatc tgataacatg gatgcggtgc
1981 tcctcgtcat tgcacagacc ttcatggacg cctgcaccct ggccgaccac aagctgggcc
2041 gggactcccc gatcaacaaa cttctgtatg cacgggacat tccccggtac aagcggatgg
2101 tggaaaggta ctatgcagac atcagacaga ctgtcccagc cagcgaccaa gagatgaact
2161 ctgtcctggc tgaactgtcc tggaactact ccggagacct cggggcgcga gtggccctgc
2221 atgaactcta caagtacatc aacaagtact atgaccagat catcactgcc ctggaggagg
2281 atggcacggc ccagaagatg cagctgggct atcggctcca gcagattgca gctgctgtgg
2341 aaaacaaggt cacagatcta taggaaccca ggagccacgg cctgctgttg cttcagcctg
2401 gcct
//