LOCUS AK296756 2987 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ53584 partial cds, highly similar to
Desmoplakin.
ACCESSION AK296756
VERSION AK296756.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2987)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2987
/clone="CTONG2008627"
/clone_lib="CTONG2"
/db_xref="H-InvDB:HIT000491380"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="tumor tissue"
/organism="Homo sapiens"
/tissue_type="tongue, tumor tissue"
CDS 126..>2987
/codon_start=1
/note="highly similar to Desmoplakin"
/protein_id="BAG59338.1"
/transl_table=1
/translation="MRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKI
KADLREKSAIYQLEEEYENLLKASFERMDHLRQLQNIIQATSREIMWINDCEEEELLY
DWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTL
QTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKKYPCDKNMPLQ
HLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQLKPRNPDYRSNKPIILRALCDYK
QDQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLIIPPPNPLAVDLSCKIEQ
YYEAILALWNQLYINMKSLVSWHYCMIDIEKIRAMTIAKLKTMRQEDYMKTIADLELH
YQEFIRNSQGSEMFGDDDKRKIQSQFTDAQKHYQTLVIQLPGYPQHQTVTTTEITHHG
TCQDVNHNKVIETNRENDKQETWMLMELQKIRRQIEHCEGRMTLKNLPLADQGSSHHI
TVKINELKSVQNDSQAIAEVLNQLKDMLANFRGSEKYCYLQNEVFGLFQKLENINGVT
DGYLNSLCTVRALLQAILQTEDMLKVYEARLTEEETVCLDLDKVEAYRCGLKKIKNDL
NLKKSLLATMKTELQKAQQIHSQTSQQYPLYDLDLGKFGEKVTQLTDRWQRIDKQIDF
RLWDLEKQIKQLRNYRDNYQAFCKWLYDAKRRQDSLESMKFGDSNTVMRFLNEQKNLH
SEISGKRDKSEEVQKIAELCANSIKDYELQLASYTSGLETLLNIPIKRTMIQSPSGVI
LQEAADVHARYIELLTRSGDYYRFLSEMLKSLEDLKLKNTKIEVLEEELRLARDANSE
NCNKNKFLDQNLQKYQAECSQFKAKLASLEELKRQAELDGKSAKQNLDKCYGQIKELN
EKITRLTYEIEDEKRRRKSVEDRFDQQKNDYDQLQKARQC"
BASE COUNT 964 a 662 c 743 g 618 t
ORIGIN
1 gagactcgct ccgccgccga ccaacaccaa cacccagctc caagggtggt ggaggctaca
61 cttgtcagag tggctctggc tgggatgagt tcaccaaaca tgtcaccagt gaatgtttgg
121 ggtggatgag gcagcaaagg gcggagatgg acatggtggc ctggggtgtg gacctggcct
181 cagtggagca gcacattaac agccaccggg gcatccacaa ctccatcggc gactatcgct
241 ggcagctgga caaaatcaaa gccgacctgc gcgagaaatc tgcgatctac cagttggagg
301 aggagtatga aaacctgctg aaagcgtcct ttgagaggat ggatcacctg cgacagctgc
361 agaacatcat tcaggccacg tccagggaga tcatgtggat caatgactgc gaggaggagg
421 agctgctgta cgactggagc gacaagaaca ccaacatcgc tcagaaacag gaggccttct
481 ccatacgcat gagtcaactg gaagttaaag aaaaagagct caataagctg aaacaagaaa
541 gtgaccaact tgtcctcaat cagcatccag cttcagacaa aattgaggcc tatatggaca
601 ctctgcagac gcagtggagt tggattcttc agatcaccaa gtgcattgat gttcatctga
661 aagaaaatgc tgcctacttt cagttttttg aagaggcgca gtctactgaa gcatacctga
721 aggggctcca ggactccatc aggaagaagt acccctgcga caagaacatg cccctgcagc
781 acctgctgga acagatcaag gagctggaga aagaacgaga gaaaatcctt gaatacaagc
841 gtcaggtgca gaacttggta aacaagtcta agaagattgt acagctgaag cctcgtaacc
901 cagactacag aagcaataaa cccattattc tcagagctct ctgtgactac aaacaagatc
961 agaaaatcgt gcataagggg gatgagtgta tcctgaagga caacaacgag cgcagcaagt
1021 ggtacgtgac gggcccggga ggcgttgaca tgcttgttcc ctctgtgggg ctgatcatcc
1081 ctcctccgaa cccactggcc gtggacctct cttgcaagat tgagcagtac tacgaagcca
1141 tcttggctct gtggaaccag ctctacatca acatgaagag cctggtgtcc tggcactact
1201 gcatgattga catagagaag atcagggcca tgacaatcgc caagctgaaa acaatgcggc
1261 aggaagatta catgaagacg atagccgacc ttgagttaca ttaccaagag ttcatcagaa
1321 atagccaagg ctcagagatg tttggagatg atgacaagcg gaaaatacag tctcagttca
1381 ccgatgccca gaagcattac cagaccctgg tcattcagct ccctggctat ccccagcacc
1441 agacagtgac cacaactgaa atcactcatc atggaacctg ccaagatgtc aaccataata
1501 aagtaattga aaccaacaga gaaaatgaca agcaagaaac atggatgctg atggagctgc
1561 agaagattcg caggcagata gagcactgcg agggcaggat gactctcaaa aacctccctc
1621 tagcagacca gggatcttct caccacatca cagtgaaaat taacgagctt aagagtgtgc
1681 agaatgattc acaagcaatt gctgaggttc tcaaccagct taaagatatg cttgccaact
1741 tcagaggttc tgaaaagtac tgctatttac agaatgaagt atttggacta tttcagaaac
1801 tggaaaatat caatggtgtt acagatggct acttaaatag cttatgcaca gtaagggcac
1861 tgctccaggc tattctccaa acagaagaca tgttaaaggt ttatgaagcc aggctcactg
1921 aggaggaaac tgtctgcctg gacctggata aagtggaagc ttaccgctgt ggactgaaga
1981 aaataaaaaa tgacttgaac ttgaagaagt cgttgttggc cactatgaag acagaactac
2041 agaaagccca gcagatccac tctcagactt cacagcagta tccactttat gatctggact
2101 tgggcaagtt cggtgaaaaa gtcacacagc tgacagaccg ctggcaaagg atagataaac
2161 agatcgactt taggttatgg gacctggaga aacaaatcaa gcaattgagg aattatcgtg
2221 ataactatca ggctttctgc aagtggctct atgatgctaa acgccgccag gattccttag
2281 aatccatgaa atttggagat tccaacacag tcatgcggtt tttgaatgag cagaagaact
2341 tgcacagtga aatatctggc aaacgagaca aatcagagga agtacaaaaa attgctgaac
2401 tttgtgccaa ttcaattaag gattatgagc tccagctggc ctcatacacc tcaggactgg
2461 aaactctgct gaacatacct atcaagagga ccatgattca gtccccttct ggggtgattc
2521 tgcaagaggc tgcagatgtt catgctcggt acattgaact acttacaaga tctggagact
2581 attacaggtt cttaagtgag atgctgaaga gtttggaaga tctgaagctg aaaaatacca
2641 agatcgaagt tttggaagag gagctcagac tggcccgaga tgccaactcg gaaaactgta
2701 ataagaacaa attcctggat cagaacctgc agaaatacca ggcagagtgt tcccagttca
2761 aagcgaagct tgcgagcctg gaggagctga agagacaggc tgagctggat gggaagtcgg
2821 ctaagcaaaa tctagacaag tgctacggcc aaataaaaga actcaatgag aagatcaccc
2881 gactgactta tgagattgaa gatgaaaaga gaagaagaaa atctgtggaa gacagatttg
2941 accaacagaa gaatgactat gaccaactgc agaaagcaag gcaatgt
//