LOCUS AK296739 2933 bp mRNA linear HUM 31-JUL-2008
DEFINITION Homo sapiens cDNA FLJ56001 partial cds, highly similar to Putative
ATP-dependent RNA helicase DHX57 (EC 3.6.1.-).
ACCESSION AK296739
VERSION AK296739.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2933)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2933
/clone="CTONG2006872"
/clone_lib="CTONG2"
/db_xref="H-InvDB:HIT000491363"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="tumor tissue"
/organism="Homo sapiens"
/tissue_type="tongue, tumor tissue"
CDS 139..>2933
/codon_start=1
/note="highly similar to Putative ATP-dependent RNA
helicase DHX57 (EC 3.6.1.-)"
/protein_id="BAG59324.1"
/transl_table=1
/translation="MSSSVRRKGKPGKGGGKGSSRGGRGGRSHASKSHGSGGGGGGGG
GGGGGNRKASSRIWDDGDDFCIFSESRRPSRPSNSNISKGESRPKWKPKAKVPLQTLH
MTSENQEKVKALLRDLQEQDADAGSERGLSGEEEDDEPDCCNDERYWPAGQEPSLVPD
LDPLEYAGLASVEPYVPEFTVSPFAVQKLSRYGFNTERCQAVLRMCDGDVGASLEHLL
TQCFSETFGERMKISEAVNQISLDECMEQRQEEAFALKSICGEKFIERIQNRVWTIGL
ELEYLTSRFRKSKPKESTKNVQENSLEICKFYLKGNCKFGSKCRFKHEVPPNQIVGRI
ERSVDDSHLNAIEDASFLYELEIRFSKDHKYPYQAPLVAFYSTNENLPLACRLHISEF
LYDKALTFAETSEPVVYSLITLLEEESEIVKLLTNTHHKYSDPPVNFLPVPSRTRINN
PACHKTVIPNNSFVSNQIPEVEKASESEESDEDDGPAPVIVENESYVNLKKKISKRYD
WQAKSVHAENGKICKQFRMKQASRQFQSILQERQSLPAWEERETILNLLRKHQVVVIS
GMTGCGKTTQIPQFILDDSLNGPPEKVANIICTQPRRISAISVAERVAKERAERVGLT
VGYQIRLESVKSSATRLLYCTTGVLLRRLEGDTALQGVSHIIVDEVHERTEESDFLLL
VLKDIVSQRPGLQVILMSATLNAELFSDYFNSCPVITIPGRTFPVDQFFLEDAIAVTR
YVLQDGSPYMRSMKQISKEKLKARRNRTAFEEVEEDLRLSLHLQDQDSVKDAVPDQQL
DFKQLLARYKGVSKSVIKTMSIMDFEKVNLELIEALLEWIVDGKHSYPPGAILVFLPG
LAEIKMLYEQLQSNSLFNNRRSNRCVIHPLHSSLSSEEQQAVFVKPPAGVTKIIISTN
IAETSITIDDVVYVIDSG"
BASE COUNT 887 a 599 c 695 g 752 t
ORIGIN
1 gtgccgctgc agctgggcca ccgcagggct gctccaagtg agaatcgtga gggtggccaa
61 gtccagtttg gacctctgac ccttgggcag cacctcccga cagccggctc gggacccaac
121 tctgcgagcc aggtgaaaat gagttcttca gtaagaagaa aaggcaagcc aggcaaagga
181 ggtggaaaag ggtcttctag aggaggaaga ggaggcagga gtcacgccag taaatctcat
241 gggagtggtg gcggtggcgg tggtggtggt ggtggaggtg gcggcaacag aaaggcctcc
301 agtagaatat gggatgatgg agatgacttt tgtatcttca gtgaatcaag gcgcccttcc
361 agacctagca acagtaacat aagcaaagga gagtcacgcc caaaatggaa acccaaagcc
421 aaagtacccc ttcagactct acatatgact tctgagaatc aagagaaagt gaaagctctt
481 ctccgagacc tgcaagaaca agatgctgat gctggatctg aaagaggcct ttctggggag
541 gaggaagatg atgagcctga ttgctgtaac gatgagcggt actggccagc tggacaggaa
601 ccttccctcg ttcccgactt ggatcctttg gaatatgctg gcttagcctc agtggagcct
661 tatgttccag aatttacagt ctccccattt gcagtgcaaa aactttccag gtatggtttc
721 aatactgaac gctgtcaagc ggtcctgagg atgtgtgatg gagatgtggg agcatcacta
781 gagcatctcc ttacccagtg tttttcagag acatttggag agaggatgaa gatctctgag
841 gcagtcaacc agataagctt ggatgagtgt atggaacagc gacaggaaga ggcatttgct
901 ctcaagtcca tctgtggaga aaaatttata gaaagaattc agaacagagt ctggaccatt
961 gggttagaac tggagtatct gacaagtaga ttccgcaaat ccaagccaaa agaaagtacc
1021 aaaaatgtac aagagaattc acttgaaatc tgtaaatttt acctcaaagg aaattgtaaa
1081 tttggatcaa aatgcagatt caaacatgaa gtgcccccaa atcaaattgt tggaagaata
1141 gaaagaagtg tagatgattc tcatcttaat gctattgaag atgcatcttt tttatatgaa
1201 cttgaaattc gattttctaa agaccacaaa tatccctacc aagctccgct cgtggcattt
1261 tattccacca atgagaacct acctctggct tgtcgtttac atatttctga gtttctttat
1321 gacaaggcct tgacatttgc ggaaacttcg gaacctgtcg tatattcttt gataaccctt
1381 ttagaggaag agtcggaaat agtcaagtta ctaacgaata cccaccacaa gtatagtgac
1441 cctcctgtga actttctgcc agtaccctct aggaccagaa taaataatcc tgcctgtcat
1501 aaaacagtga ttccaaataa ttcttttgtt tctaatcaaa ttccagaagt tgaaaaagca
1561 tcagaatctg aggagtcaga tgaggatgac ggtcctgcac ctgttatagt agagaatgaa
1621 agctatgtga accttaagaa aaagatttcc aaaagatatg actggcaggc aaagtcagta
1681 catgctgaaa atggtaaaat ctgcaagcag ttccgaatga aacaggcttc cagacagttc
1741 cagtccattc tgcaagagag gcaatcactc cctgcttggg aagaaagaga aaccattctt
1801 aacttattgc gtaagcacca ggtggttgtc ataagtggta tgactggatg tgggaaaacc
1861 acacaaattc cgcagtttat tctggatgat tctctgaatg gaccacctga gaaggtagcc
1921 aacatcatct gtacccaacc ccgacgaatc tctgcaatct ctgttgctga acgcgttgct
1981 aaagaaagag cagagagggt gggtctgacc gtgggatacc agattcggtt agaaagtgtc
2041 aagtcctcag ccaccagact gttatactgc accacgggag tgctgctgag aaggctagaa
2101 ggagatacag ctctacaagg agtttcccat atcattgttg atgaagttca tgagaggaca
2161 gaagaaagtg acttcttgct gctagttttg aaggacattg tatcgcagag gccaggtctt
2221 caagttattt taatgagtgc aactctaaac gctgagcttt tttcagacta ttttaattcc
2281 tgccccgtta ttactatacc aggtcgtaca tttcctgttg atcaattttt tttggaagat
2341 gcaattgctg tgacaaggta tgtattacag gatgggagcc catatatgcg gtccatgaaa
2401 cagatttcaa aggaaaagct taaagcaagg cggaacagaa ctgcatttga agaagtggaa
2461 gaagacctaa ggctctccct tcacctccag gatcaggatt ctgtcaaaga tgcagtgcca
2521 gatcaacagt tagattttaa gcagctcctg gcccgctata aaggggttag caagtcagtc
2581 atcaaaacaa tgtccatcat ggattttgaa aaggtgaatc ttgaattaat agaggcctta
2641 ttagagtgga ttgtggatgg aaagcactcc taccctccag gtgctatact tgtattttta
2701 ccaggactag cagaaatcaa aatgctttat gaacagctac agtctaattc tcttttcaac
2761 aacagacgta gtaatcgatg tgttattcac ccacttcatt catctttatc cagtgaagag
2821 cagcaggctg tgtttgtaaa acctcctgca ggagtaacta agattataat ttccaccaac
2881 attgctgaga catccataac catcgatgat gttgtctatg ttatcgattc tgg
//