LOCUS AK296633 1971 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ58175 complete cds, highly similar to
Hepatocyte nuclear factor 1-beta.
ACCESSION AK296633
VERSION AK296633.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1971)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1971
/clone="COLON2005683"
/clone_lib="COLON2"
/db_xref="H-InvDB:HIT000491257"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="colon"
CDS 176..1771
/codon_start=1
/note="highly similar to Hepatocyte nuclear factor 1-beta"
/protein_id="BAG59235.1"
/transl_table=1
/translation="MVSKLTSLQQELLSALLSSGVTKEVLVQALEELLPSPNFGVKLE
TLPLSPGSGAEPDTKPVFHTLTNGHAKGRLSGDEGSEDGDDYDTPPILKELQALNTEE
AAEQRAEVDRMLSEDPWRAAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTPM
KTQKRAALYTWYVRKQREILRQFSQQSHGPGQSDDACSEPTNKKMRRNRFKWGPASQQ
ILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFAN
RRKEEAFRQKLAMDAYSSNQTHSLNPLLSHGSPHHQPSSSPPNKLSGVRYSQQGNNEI
TSSSTISHHGNSAMVTSQSVLQQVSPASLDPGHNLLSPDGKMISVSGGGLPPVSTLTN
IHSLSHHNPQQSQNLIMTPLSGVMAIAQSLNTSQAQSVPVINSVAGSLAALQPVQFSQ
QLHSPHQQPLMQQSPGSHMAQQPFMAAVTQLQNSHMYAHKQEPPQYSHTSRFPSAMVV
TDTSSISTLTNMSSSKQCPLQAW"
BASE COUNT 460 a 672 c 492 g 347 t
ORIGIN
1 agaagttttc tgactccttt cggaggagcc tccgggaccc cggggagtaa caggtgtctg
61 gaggctgaag ggtggagggg ttcctggatt tggggtttgc ttgtgaaact cccctccacc
121 ctcctctctc gcacccaccc accccctcac ccccttcttt ttccgtcctt ggaaaatggt
181 gtccaagctc acgtcgctcc agcaagaact cctgagcgcc ctgctgagct ccggggtcac
241 caaggaggtg ctggttcagg ccttggagga gttgctgcca tccccgaact tcggggtgaa
301 gctggagacg ctgcccctgt cccctggcag cggggccgag cccgacacca agccggtctt
361 ccatactctc accaacggcc acgccaaggg ccgcttgtcc ggcgacgagg gctccgagga
421 cggcgacgac tatgacacac ctcccatcct caaggagctg caggcgctca acaccgagga
481 ggcggcggag cagcgggcgg aggtggaccg gatgctcagt gaggaccctt ggagggctgc
541 taaaatgatc aagggttaca tgcagcaaca caacatcccc cagagggagg tggtcgatgt
601 caccggcctg aaccagtcgc acctctccca gcatctcaac aagggcaccc ctatgaagac
661 ccagaagcgt gccgctctgt acacctggta cgtcagaaag caacgagaga tcctccgaca
721 gttcagtcaa cagagccatg ggcctgggca gtccgatgat gcctgctctg agcccaccaa
781 caagaagatg cgccgcaacc ggttcaaatg ggggcccgcg tcccagcaaa tcttgtacca
841 ggcctacgat cggcaaaaga accccagcaa ggaagagaga gaggccttag tggaggaatg
901 caacagggca gaatgtttgc agcgaggggt gtccccctcc aaagcccacg gcctgggctc
961 caacttggtc actgaggtcc gtgtctacaa ctggtttgca aaccgcagga aggaggaggc
1021 attccggcaa aagctggcca tggacgccta tagctccaac cagactcaca gcctgaaccc
1081 tctgctctcc cacggctccc cccaccacca gcccagctcc tctcctccaa acaagctgtc
1141 aggagtgcgc tacagccagc agggaaacaa tgagatcact tcctcctcaa caatcagtca
1201 ccatggcaac agcgccatgg tgaccagcca gtcggtttta cagcaagtct ccccagccag
1261 cctggaccca ggccacaatc tcctctcacc tgatggtaaa atgatctcag tctcaggagg
1321 aggtttgccc ccagtcagca ccttgacgaa tatccacagc ctctcccacc ataatcccca
1381 gcaatctcaa aacctcatca tgacacccct ctctggagtc atggcaattg cacaaagcct
1441 caacacctcc caagcacaga gtgtccctgt catcaacagt gtggccggca gcctggcagc
1501 cctgcagccc gtccagttct cccagcagct gcacagccct caccagcagc ccctcatgca
1561 gcagagccca ggcagccaca tggcccagca gcccttcatg gcagctgtga ctcagctgca
1621 gaactcacac atgtacgcac acaagcagga acccccccag tattcccaca cctcccggtt
1681 tccatctgca atggtggtca cagataccag cagcatcagt acactcacca acatgtcttc
1741 aagtaaacag tgtcctctac aagcctggtg atgcccacac accacttact tcgtgcgcaa
1801 caacaaggac cctgttttcc acaccatcac cctctgggca gctgtcatgg aaaagcccag
1861 tgacctgacc ggcacctgcg agaggtccct gcttacctga cggacgtcct gctggcacct
1921 cagacaatcc actctcagga ggcgcagccc gaagcccagt ttcccttcta t
//