LOCUS AK296496 3544 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ53579 complete cds, highly similar to
Integrin alpha-6 precursor.
ACCESSION AK296496
VERSION AK296496.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3544)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3544
/clone="BRTHA3020652"
/clone_lib="BRTHA3"
/db_xref="H-InvDB:HIT000491120"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="thalamus"
CDS 214..3078
/codon_start=1
/note="highly similar to Integrin alpha-6 precursor"
/protein_id="BAG59130.1"
/transl_table=1
/translation="MGVTVQSQGPGGKVVTCAHRYEKRQHVNTKQESRDIFGRCYVLS
QNLRIEDDMDGGDWSFCDGRLRGHEKFGSCQQGVAATFTKDFHYIVFGAPGTYNWKGL
LFLTSVSYTDPDQFVYKTRPPREQPDTFPDVMMNSYLGFSLDSGKGIVSKDEITFVSG
APRANHSGAVVLLKRDMKSAHLLPEHIFDGEGLASSFGYDVAVVDLNKDGWQDIVIGA
PQYFDRDGEVGGAVYVYMNQQGRWNNVKPIRLNGTKDSMFGITVKNIGDINQDGYPDI
AVGAPYDDLGKVFIYHGSANGINTKPTQVLKGISPYFGYSIAGNMDLDRNSYPDVAVG
SLSDSVTIFRSRPVINIQKTITVTPNRIDLRQKTACGAPSGICLQVKSCFEYTANPAG
YNPSISIVGTLEAEKERRKSGLSSRVQFRNQGSEPKYTQELTLKRQKQKVCMEETLWL
QDNIRDKLRPIPITASVEIQEPSSRRRVNSLPEVLPILNSDEPKTAHIDVHFLKEGCG
DDNVCNSNLKLEYKFCTREGNQDKFSYLPIQKGVPELVLKDQKDIALEITVTNSPSNP
RNPTKDGDDAHEAKLIATFPDTLTYSAYRELRAFPEKQLSCVANQNGSQADCELGNPF
KRNSNVTFYLVLSTTEVTFDTPDLDINLKLETTSNQDNLAPITAKAKVVIELLLSVSG
VAKPSQVYFGGTVVGEQAMKSEDEVGSLIEYEFRVINLGKPLTNLGTATLNIQWPKEI
SNGKWLLYLVKVESKGLEKVTCEPQKEINSLNLTESHNSRKKREITEKQIDDNRKFSL
FAERKYQTLNCSVNVNCVNIRCPLRGLDSKASLILRSRLWNSTFLEEYSKLNYLDILM
RAFIDVTAAAENIRLPNAGTQVRVTVFPSKTVAQYSGVPWWIILVAILAGILMLALLV
FILWKCGFFKRNKKDHYDATYHKAEIHAQPSDKERLTSDA"
BASE COUNT 1067 a 708 c 834 g 935 t
ORIGIN
1 acgtcgtggc ttccgggcag gtaccgggca gctggagacg ccagagccgg cgggttgctc
61 gtgggggccc cgcgggcaga agcgcttcca ctgcagagag ccaacagaac gggagggctg
121 tacagctgcg acatcaccgc ccgggggcca tgcacgcgga tcgagtttga taacgatgct
181 gaccccacgt cagaaagcaa ggaagatcag tggatggggg tcaccgtcca gagccaaggt
241 ccagggggca aggtcgtgac atgtgctcac cgatatgaaa aaaggcagca tgttaatacg
301 aagcaggaat cccgagacat ctttgggcgg tgttatgtcc tgagtcagaa tctcaggatt
361 gaagacgata tggatggggg agattggagc ttttgtgatg ggcgattgag aggccatgag
421 aaatttggct cttgccagca aggtgtagca gctactttta ctaaagactt tcattacatt
481 gtatttggag ccccgggtac ttataactgg aaaggcctgc tgtttttgac cagcgtttcc
541 tatacagatc ctgatcagtt tgtttataaa acacggcctc cccgggagca gcctgacaca
601 ttccctgatg tgatgatgaa tagctaccta ggtttttctt tggactcagg gaaaggtatt
661 gtttctaaag atgagatcac ttttgtatct ggtgctccca gagccaatca cagtggagcc
721 gtggttttgc tgaagagaga catgaagtct gcacatctcc tccctgagca catattcgat
781 ggagaaggtc tggcctcttc atttggctat gatgtggcgg tggtggacct caacaaggat
841 gggtggcaag atatagttat tggagcccca cagtattttg atagagatgg agaagttgga
901 ggtgcagtgt atgtctacat gaaccagcaa ggcagatgga ataatgtgaa gccaattcgt
961 cttaatggaa ccaaagattc tatgtttggc attacagtaa aaaatattgg agatattaat
1021 caagatggct acccagatat tgcagttgga gctccgtatg atgacttggg aaaggttttt
1081 atctatcatg gatctgcaaa tggaataaat accaaaccaa cacaggttct caagggtata
1141 tcaccttatt ttggatattc aattgctgga aacatggacc ttgatcgaaa ttcctaccct
1201 gatgttgctg ttggttccct ctcagattca gtaactattt tcagatcccg gcctgtgatt
1261 aatattcaga aaaccatcac agtaactcct aacagaattg acctccgcca gaaaacagcg
1321 tgtggggcgc ctagtgggat atgcctccag gttaaatcct gttttgaata tactgctaac
1381 cccgctggtt ataatccttc aatatcaatt gtgggcacac ttgaagctga aaaagaaaga
1441 agaaaatctg ggctatcctc aagagttcag tttcgaaacc aaggttctga gcccaaatat
1501 actcaagaac taactctgaa gaggcagaaa cagaaagtgt gcatggagga aaccctgtgg
1561 ctacaggata atatcagaga taaactgcgt cccattccca taactgcctc agtggagatc
1621 caagagccaa gctctcgtag gcgagtgaat tcacttccag aagttcttcc aattctgaat
1681 tcagatgaac ccaagacagc tcatattgat gttcacttct taaaagaggg atgtggagac
1741 gacaatgtat gtaacagcaa ccttaaacta gaatataaat tttgcacccg agaaggaaat
1801 caagacaaat tttcttattt accaattcaa aaaggtgtac cagaactagt tctaaaagat
1861 cagaaggata ttgctttaga aataacagtg acaaacagcc cttccaaccc aaggaatccc
1921 acaaaagatg gcgatgacgc ccatgaggct aaactgattg caacgtttcc agacacttta
1981 acctattctg catatagaga actgagggct ttccctgaga aacagttgag ttgtgttgcc
2041 aaccagaatg gctcgcaagc tgactgtgag ctcggaaatc cttttaaaag aaattcaaat
2101 gtcacttttt atttggtttt aagtacaact gaagtcacct ttgacacccc agatctggat
2161 attaatctga agttagaaac aacaagcaat caagataatt tggctccaat tacagctaaa
2221 gcaaaagtgg ttattgaact gcttttatcg gtctcgggag ttgctaaacc ttcccaggtg
2281 tattttggag gtacagttgt tggcgagcaa gctatgaaat ctgaagatga agtgggaagt
2341 ttaatagagt atgaattcag ggtaataaac ttaggtaaac ctcttacaaa cctcggcaca
2401 gcaaccttga acattcagtg gccaaaagaa attagcaatg ggaaatggtt gctttatttg
2461 gtgaaagtag aatccaaagg attggaaaag gtaacttgtg agccacaaaa ggagataaac
2521 tccctgaacc taacggagtc tcacaactca agaaagaaac gggaaattac tgaaaaacag
2581 atagatgata acagaaaatt ttctttattt gctgaaagaa aataccagac tcttaactgt
2641 agcgtgaacg tgaactgtgt gaacatcaga tgcccgctgc gggggctgga cagcaaggcg
2701 tctcttattt tgcgctcgag gttatggaac agcacatttc tagaggaata ttccaaactg
2761 aactacttgg acattctcat gcgagccttc attgatgtga ctgctgctgc cgaaaatatc
2821 aggctgccaa atgcaggcac tcaggttcga gtgactgtgt ttccctcaaa gactgtagct
2881 cagtattcgg gagtaccttg gtggatcatc ctagtggcta ttctcgctgg gatcttgatg
2941 cttgctttat tagtgtttat actatggaag tgtggtttct tcaagagaaa taagaaagat
3001 cattatgatg ccacatatca caaggctgag atccatgctc agccatctga taaagagagg
3061 cttacttctg atgcatagta ttgatctact tctgtaattg tgtggattct ttaaacgctc
3121 taggtacgat gacagtgttc cccgatacca tgctgtaagg atccggaaag aagagcgaga
3181 gatcaaagat gaaaagtata ttgataacct tgaaaaaaaa cagtggatca caaagtggaa
3241 cgaaaatgaa agctactcat agcgggggcc taaaaaaaaa aagcttcaca gtacccaaac
3301 tgctttttcc aactcagaaa ttcaatttgg atttaaaagc ctgctcaatc cctgaggact
3361 gatttcagag tgactacaca cagtacgaac ctacagtttt aactgtggat attgttacgt
3421 agcctaaggc tcctgttttg cacagccaaa tttaaaactg ttggaatgga tttttcttta
3481 actgccgtaa tttaactttc tgggttgcct ttgtttttgg cgtggctgac ttacatcatg
3541 tgtt
//