LOCUS AK296389 4219 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ57514 complete cds, highly similar to
Tripartite motif-containing protein 36.
ACCESSION AK296389
VERSION AK296389.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4219)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..4219
/clone="BRTHA3011108"
/clone_lib="BRTHA3"
/db_xref="H-InvDB:HIT000491013"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="thalamus"
CDS 328..2478
/codon_start=1
/note="highly similar to Tripartite motif-containing
protein 36"
/protein_id="BAH12340.1"
/transl_table=1
/translation="MEGDGSDSPVTIKNIERELICPACKELFTHPLILPCQHSICHKC
VKELLLTLDDSFNDVGSDNSNQSSPRLRLPSPSMDKIDRINRPGWKRNSLTPRTTVFP
CPGCEHDVDLGERGINGLFRNFTLETIVERYRQAARAATAIMCDLCKPPPQESTKSCM
DCSASYCNECFKIHHPWGTIKAQHEYVGPTTNFRPKILMCPEHETERINMYCELCRRP
VCHLCKLGGNHANHRVTTMSSAYKTLKEKLSKDIDYLIGKESQVKSQISELNLLMKET
ECNGERAKEEAITHFEKLFEVLEEGKSSVLKAIDSSKKLRLDKFQTQMEEYQGLLENN
GLVGYAQEVLKETDQSCFVQTAKQLHLRIQKATESLKSFRPAAQTSFEDYVVNTSKQT
ELLGELSFFSSGIDVPEINEEQSKVYNNALINWHHPEKDKADSYVLEYRKINRDDEMS
WNEIEVCGTSKIIQDLENSSTYAFRVRAYKGSICSPCSRELILHTPPAPVFSFLFDEK
CGYNNEHLLLNLKRDRVESRAGFNLLLAAERIQVGYYTSLDYIIGDTGITKGKHFWAF
RVEPYSYLVKVGVASSDKLQEWLRSPRDAVSPRYEQDSGHDSGSEDACFDSSQPFTLV
TIGMQKFFIPKSPTSSNEPENRVLPMPTSIGIFLDCDKGKVNFYDMDQMKCLYERQVD
CSHTLYPAFALMGSGGIQLEEPITAKYLEYQEDM"
BASE COUNT 1275 a 793 c 857 g 1294 t
ORIGIN
1 gtccacgccc cgcggtgccc cgcccaggtc tctgcgcggc gccgttccca gccgcagtcc
61 gcaggagccg ctgctgcagc cggcagctgg gcgggattcc cggggtagtc gctgggagca
121 aagctcgctt ctcccgcgcc tgtgcttttg cctgccccgg cttacttctc cccgcgtcgg
181 tccgctggcc acgtacagct gaccagctca tcttccagct tcggaccgag gctccacggc
241 cgccgcaggg acccgcccac cagaccctgc gctcggtagc cggtgtgagt ggaacgtgcc
301 gctgatgaca cctggcagaa ggcagccatg gagggcgatg gctcagattc gccggttacc
361 attaagaata tcgaaaggga gctcatttgc ccagcatgca aggagctgtt tacccaccca
421 ttgattctcc cttgccaaca tagtatctgt cataaatgtg taaaagaact cctgctgact
481 ctcgatgatt cattcaacga tgtgggatca gacaactcca atcaaagcag tcctcgactt
541 cggctcccct cccctagtat ggataaaatt gaccgaatta acagaccagg ctggaagcgc
601 aattcattga ccccgaggac aactgttttc ccttgccctg gctgtgagca tgatgtggat
661 cttggagaac gaggaatcaa tggtctgttt cgaaacttca ctttggaaac tattgtggaa
721 agatatcgtc aagcagctag ggcagccaca gccattatgt gtgacctttg taaaccacca
781 cctcaagaat ccacaaaaag ctgcatggac tgtagtgcaa gttactgcaa tgaatgcttc
841 aaaattcatc acccttgggg tactataaaa gctcaacatg agtatgttgg tccaactact
901 aacttcagac ccaagatttt aatgtgccca gaacatgaaa cagagagaat aaacatgtac
961 tgtgaattat gtaggaggcc agtttgccat ctgtgtaagt tgggtggtaa tcatgccaac
1021 caccgtgtaa ccactatgag cagtgcctac aaaaccttaa aggaaaagct ttcaaaggat
1081 attgattacc ttattggtaa ggaaagccag gtgaagagtc aaatatctga actaaacttg
1141 ttaatgaaag aaacagagtg taatggagag agggctaaag aagaagcaat tacacatttt
1201 gaaaagctct ttgaagttct ggaagagggg aaatcatctg ttttgaaagc aattgactcc
1261 tctaagaaac taagattaga caaatttcag actcaaatgg aagagtacca gggacttcta
1321 gagaacaatg gacttgtggg atatgctcaa gaagtgctaa aggagacaga tcagtcttgc
1381 tttgtgcaga cagcaaagca gctccacctc agaatacaga aagccacaga atctttgaag
1441 agctttagac ctgcagctca gacttctttt gaagactatg ttgttaatac ctctaaacaa
1501 acagaacttc ttggagaatt atcctttttc tctagtggca tagacgtgcc agagatcaat
1561 gaggaacaga gcaaagttta taacaatgcc ttgataaatt ggcaccatcc agaaaaggat
1621 aaagctgata gctatgttct tgaatatcgg aaaatcaata gagatgatga aatgtcatgg
1681 aatgagatag aagtgtgtgg aacaagtaaa ataattcaag acttggaaaa cagtagtacc
1741 tatgctttca gagtaagagc ttacaagggt tcaatctgta gtccttgcag cagagaattg
1801 attcttcata ctcctccagc tccagttttc agcttcctct ttgatgaaaa atgtggctat
1861 aataatgaac acctcctgct gaacttgaag agagaccgtg tagagagtag agctggattt
1921 aatcttctgc ttgctgcaga acgcatccaa gtgggttatt acacaagctt agactacatc
1981 attggagata ctggcattac aaaaggaaaa cacttctggg ccttccgtgt ggaaccatat
2041 tcatacctgg taaaagtggg agttgcttct agcgataaac tacaagaatg gctccgttct
2101 ccccgggatg cagttagtcc aagatatgag caagacagtg ggcatgacag tggaagtgag
2161 gatgcctgtt ttgattcttc acaaccattt accttagtta ctataggcat gcagaaattt
2221 tttataccca agtcacctac ttcttctaat gaacctgaaa atagagttct ccctatgcca
2281 acaagtattg ggattttcct tgactgtgat aaaggcaaag taaatttcta tgatatggat
2341 cagatgaaat gcctttatga acgccaagtg gactgttcac atacactgta tccagcattt
2401 gcattaatgg gcagtggagg aattcagctt gaagaaccca tcacagcaaa atatctggaa
2461 taccaagagg acatgtagtt gaaacatctg atgtgactca ggataaaaac tgtaaacaaa
2521 gcaatgcctt agcgttaacc ttcgtaacta attacatatc gctgagtgtt ctgtcacccc
2581 acttgtgttt gagtatgatt cttcttgaaa tacagaaaat ctaaacagcc ttgtgtcttc
2641 atgtcgttgt tctgcctttc acaaatgatg aaagtgaaga tgttctttcc aagttaatac
2701 tgaagtggtt aactttgcaa ctggactgtc ttttacttta tgtacaggat atctaattta
2761 tttctgtcag ctggtgttgc tgacactttc cttatggtgg gggggataca aaagtattta
2821 ttatgattct cttctgtttg acttttcatt tttatatcat gtttatgtcc taagagaaga
2881 tattttttaa atgccttatg gataggaatt agtactaagc aatgtgtctt gcatttgttt
2941 tcaataggaa aacaaagttc tagataggtt aaaagaaaaa caccataaaa gtggtagtat
3001 atttaagtgg aaaattatgt attttaaagt gtgtaactat taaaaatata ttgcctggaa
3061 aaggaatact actgttttgt tttgttaaga ccacaaactg tattgctaag gacattttaa
3121 gagtctgctt agccataaca ctcatttaac agcatgggta gtaagcatgg tttcttgcag
3181 aaaacacaaa gttctcagct aacacattaa acttctcact ttatatactt tttttcagag
3241 aaatttatct ttagtttttc ttattctgtg aaaatatttg ttcttatgtc aaagaattat
3301 ttttcagata tattggtaaa gatggactga tattaaaagt catatttatt cttttacccc
3361 cttactgtgt tttgtgattt tcatttttgg cccaattatt acatatcagg ttttcctgat
3421 ttatatttac atgtttgaaa agttcattat atattttagt agcgttacat atattataaa
3481 tttttgtaac atttaaatgt tcacttatgt ggcattttct gtttctcatt ggtaataagc
3541 atttctaata taagcaagta aaaatacaaa tttaattact tagaaatgat aactaagatc
3601 acaatgactg tgtacccttt aaaatatctt ttaatttgag gaattacatt ctatctaaat
3661 tgtgtgtctg tttttgaaag gtgttgcttt caagtaggtg gtttttattt aaagtactta
3721 tttttttgag gttaaaatat tcagaaacta cttttatgca ttgtagcagt aatcatttat
3781 ggaatgcttt tgacatgttt taacagggta accaaaactt ttaggcctgt tttttttggt
3841 tgtccttgtt gttatatttt taatggaaat ctgttactca ggctggtagc attaaattag
3901 ctttttaccc tcaactcaag tagcaaatat catggagaac ttcagtgttt agcaggctgt
3961 taatttccca tctatgaata gcactttatg atgtaggcta aactaagcaa ataatgcagc
4021 gttatgtgga tcattatgca ataaagctgc taaagtcaca tttgtggttg atactcaagc
4081 cttgtacaag cacatatcat gtagacattt ttaaatgtga agctttaaca ggaataggat
4141 agctgtttca aaccttgtgc aattgtaaat aaattgttta gctgtgtttc tttcattttt
4201 aataaaaaat taaaaagag
//