LOCUS AK296379 3341 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ58161 complete cds, highly similar to HECT
domain and RCC1-like domain protein 3.
ACCESSION AK296379
VERSION AK296379.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3341)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3341
/clone="BRTHA3009944"
/clone_lib="BRTHA3"
/db_xref="H-InvDB:HIT000491003"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="thalamus"
CDS 315..3113
/codon_start=1
/note="highly similar to HECT domain and RCC1-like domain
protein 3"
/protein_id="BAG59053.1"
/transl_table=1
/translation="MTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWG
KNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAG
QLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDS
MNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVK
CPSPVKGYWAAHSGQLSARADRFKYHIVKQIFSGGDQTFVLCSKYENYSPAVDFRTMN
QAHYTSLINDETIAVWRQKLSEHNNANTINGVVQILSSAACWNGSFLEKKIDEHFKTS
PKIPGIDLNSTRVLFEKLMNSQHSMILEQILNSFESCLIPQLSSSPPDVEAMRIYLIL
PEFPLLQDSKYYITLTIPLAMAILRLDTNPSKVLDNWWSQVCPKYFMKLVNLYKGAVL
YLLRGRKTFLIPVLFNNYITAALKLLEKLYKVNLKVKHVEYDTFYIPEISNLVDIQED
YLMWFLHQAGMKARPSIIQDTVTLCSYPFIFDAQAKTKMLQTDAELQMQVAVNGANLQ
NVFMLLTLEPLLARSPFLVLHVRRNNLVGDALRELSIHSDIDLKKPLKVIFDGEEAVD
AGGVTKEFFLLLLKELLNPIYGMFTYYQDSNLLWFSDTCFVEHNWFHLIGITCGLAIY
NSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQELLDYPGEDVEETFCLNFT
ICRESYGVIEQKKLIPGGDNVTVCKDNRQEFVDAYVNYVFQISVHEWYTAFSSGFLKV
CGGKVLELFQPSELRAMMVGNSNYNWEELEETAIYKGDYSATHPTVKLFWETFHEFPL
EKKKKFLLFLTGSDRIPIYGMASLQIVIQSTASGEEYLPVAHTCYNLLDLPKYSSKEI
LSARLTQALDNYEGFSLA"
BASE COUNT 890 a 725 c 811 g 915 t
ORIGIN
1 attccgccgc ccgcaggctt gcggggaaac ttccttatta ttgtgacgcc gaaaacggag
61 aaaccccggg tccggcgaga ggggctgtga cagtcggagt cccaagctgc ggttcggctg
121 ctgccgagaa ctgcaaggtg tggaatattt ctggcttcta gtccaatgcc aagtgtgtga
181 cctgtgaaca aattggagct ctggcagatc agcatatcat tcatgtggca tgtggcgagt
241 cccacagtct ggccctcagt gaccgaggcc agctgttttc ttggggtgca gggagtgatg
301 gtcagctagg actcatgact actgaggatt ctgtggcagt gcccaggtta atacaaaagc
361 tgaaccagca aacaatatta caagtttcct gtggcaactg gcattgcttg gctcttgcgg
421 ctgatggcca gttcttcacc tggggaaaga acagccatgg gcagcttggc ttagggaagg
481 agttcccctc ccaagccagc ccacagaggg tgaggtccct ggaggggatc ccactggctc
541 aggtggctgc cggaggggct cacagctttg ccctgtctct ctcaggagct gtttttggct
601 gggggatgaa taatgccggg cagctagggc tcagtgatga aaaagatcga gaatctccat
661 gccatgtaaa actcttacgc acgcaaaaag ttgtctatat tagttgtgga gaagaacaca
721 cagcagttct cacaaagagt ggaggtgtgt ttacctttgg cgctggttcc tgtgggcaac
781 ttggacacga ctccatgaat gatgaggtta accctagaag agttctagag ctgatgggta
841 gtgaagtaac tcaaattgct tgtggcagac aacataccct agccttcgtg ccttcttctg
901 gactcatcta tgcatttggt tgtggagcaa gaggtcaatt aggaactggg cacacttgta
961 atgttaagtg cccatctcct gtcaagggtt actgggctgc ccacagtggc cagctttcag
1021 cccgagctga tcgctttaaa tatcatatcg ttaagcagat cttctctgga ggagaccaga
1081 cttttgtact ttgctccaaa tacgagaatt attctcctgc tgttgacttc aggactatga
1141 accaagcaca ttataccagt ttaataaatg atgaaaccat agcagtttgg agacaaaaac
1201 tctcagaaca caacaatgca aatacaatca atggtgttgt tcagatatta tcttctgcag
1261 cctgttggaa tggaagtttt cttgaaaaaa aaattgatga acattttaaa acgagtccca
1321 aaatccctgg gattgacctg aactcaacta gggtgttatt tgagaagtta atgaactctc
1381 agcactccat gattctagaa cagattttga acagttttga aagttgtctg attccccagt
1441 tgtcaagctc accaccagat gttgaagcca tgagaatcta tttaatacta cctgagtttc
1501 ccctactcca ggattccaag tattatataa cattgactat tcccttggct atggccattc
1561 ttcggctgga tacaaacccc agcaaagtac tagataactg gtggtctcag gtatgcccga
1621 aatatttcat gaagctggta aacctctata aaggtgcagt cctttatcta ctgaggggaa
1681 gaaagacatt cttaattccc gtactgttta acaattatat cacagcagct ctcaaactct
1741 tggagaagtt atataaggta aatcttaaag tgaagcatgt ggaatatgat acattttaca
1801 ttcctgagat ttccaatctc gtggacattc aggaagacta cctcatgtgg ttcttgcatc
1861 aagcagggat gaaggctaga ccatcaataa tacaggatac tgtaacactt tgttcctacc
1921 ctttcatctt tgatgcccaa gccaagacca aaatgttaca gacagatgct gaactacaga
1981 tgcaggtggc agtcaatgga gccaacctgc agaatgtctt catgcttctc accctggagc
2041 ctctgctggc cagaagcccc ttcctggtcc ttcacgttcg caggaacaac cttgttggag
2101 atgccctaag agagctgagc attcattctg atattgattt gaaaaagcct ctcaaagtaa
2161 tctttgatgg tgaagaagca gtggatgccg gtggtgttac aaaggaattt tttcttttgc
2221 tgttaaaaga acttttgaat cccatctatg gaatgtttac ctactatcaa gattcaaatc
2281 tcttgtggtt ttcagacacg tgttttgtag agcacaactg gtttcacttg attggtataa
2341 cctgtggact agctatctac aactccactg tggtcgatct ccacttccca ttggctctct
2401 acaagaagtt actcaatgta aagcctggct tggaagactt aaaggagttg tcacccactg
2461 aaggaaggag tctccaagag cttttagatt accccgggga ggatgtggag gagactttct
2521 gcctcaactt cacgatctgc cgagaaagct atggagtgat tgaacagaag aagctgatac
2581 ctgggggaga taatgtaact gtgtgcaagg ataacaggca ggaatttgtg gatgcttatg
2641 tgaattatgt cttccaaatc tcagttcatg aatggtacac agccttctct agtggcttcc
2701 taaaggtgtg tggtggcaaa gtacttgagc tcttccagcc ttcagaactg agggctatga
2761 tggtggggaa cagcaactac aactgggaag aactggaaga gactgccatc tacaagggag
2821 attactcggc cacacatccc actgtaaaac tattttggga aacatttcat gagtttccat
2881 tggaaaagaa gaagaagttt ctcttgttcc tgacaggcag cgatcggatt cccatctacg
2941 gcatggccag tctgcagatt gtcatccagt ccacagccag cggggaggag tacttgccgg
3001 tggcccacac ttgctacaac cttcttgacc tccccaagta cagcagcaaa gagattctga
3061 gtgcccggct gacccaggcc cttgacaact atgaagggtt tagtttggcc tgaggcttct
3121 cagcttgtcc agtatttccc ttcgttcctc agtgtccaca ttgaggccta tacagaaaat
3181 catggggagt gatttctatt tttttattgt ctaagtgggt tgggactttt aaatactgag
3241 ccttgttgat gtgtttctgg gattgtatag cagtaaacaa cctttttgaa aaattagagg
3301 ttggggatgg ggtgaaaaat tggcccttgt atgggaggtg t
//