LOCUS AK296344 3390 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ57882 complete cds, highly similar to
Pre-mRNA-processing-splicing factor 8.
ACCESSION AK296344
VERSION AK296344.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3390)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3390
/clone="BRTHA3004732"
/clone_lib="BRTHA3"
/db_xref="H-InvDB:HIT000490968"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="thalamus"
CDS 21..3218
/codon_start=1
/note="highly similar to Pre-mRNA-processing-splicing
factor 8"
/protein_id="BAG59028.1"
/transl_table=1
/translation="MTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPV
VFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYI
QPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTL
AYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHT
LFKGTYFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRAN
VYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDAL
EIETVQKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWI
DIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFP
GSKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIW
FVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQL
AKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQ
ACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKV
ILKPDKTTITEPHHIWPTLTDEEWIKVKVQLKDLILADYGKKNNVNVASLTQSEIRDI
ILGMEISAPSQQRQQIAEIEKQTKEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFS
SKTEWRVRAISAANLHLRTNHIYVSSDDIKETGYTYILLKNVLKKFICISDLRAQIAG
YLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPGQLPQHEYLKEMEPLGWIHTQPNE
SPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNT
DKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYELQLAN
PKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA"
BASE COUNT 871 a 945 c 816 g 758 t
ORIGIN
1 atacagctct cattggcctt atgacatact ttcgggaggc tgtggtgaac acccaagagc
61 tcttggactt actggtgaag tgtgagaaca aaatccagac acgtatcaag attggactca
121 actccaagat gccaagtcgg ttccccccgg ttgtgttcta cacccctaag gagttgggtg
181 gactcggcat gctctcaatg ggccatgtgc tcatccccca atccgacctc aggtggtcca
241 aacagacaga tgtaggtatc acacactttc gttcaggaat gagccatgaa gaagaccagc
301 tcattcccaa cttgtaccgc tacatacagc catgggagag cgagttcatt gattctcagc
361 gggtctgggc tgagtacgca ctcaagaggc aagaggccat tgctcagaac agacgcctga
421 ctttagaaga cctagaagat tcatgggatc gtggcattcc tcgaatcaat accctcttcc
481 agaaggaccg gcacacactg gcttatgata agggctggcg tgtcagaact gactttaagc
541 agtatcaggt tttgaagcag aatccgttct ggtggacaca ccagcggcat gatgggaagc
601 tctggaacct gaacaactac cgtacagaca tgatccaggc cctgggcggt gtggaaggca
661 ttctggaaca cacactcttt aagggcactt acttccctac ctgggagggg cttttctggg
721 agaaggccag tggctttgag gaatctatga agtggaagaa gctaactaat gctcagcgat
781 caggactgaa ccagattccc aatcgtagat tcaccctctg gtggtccccg accattaatc
841 gagccaatgt atatgtaggc tttcaggtgc agctagacct gacgggtatc ttcatgcacg
901 gcaagatccc cacgctgaag atctctctca tccagatctt ccgagctcac ttgtggcaga
961 agatccatga gagcattgtt atggacttat gtcaggtgtt tgaccaggaa cttgatgcac
1021 tggaaattga gacagtacaa aaggagacaa tccatccccg aaagtcatat aagatgaact
1081 cttcctgtgc agatatcctg ctctttgcct cctataagtg gaatgtctcc cggccctcat
1141 tgctggctga ctccaaggat gtgatggaca gcaccaccac ccagaaatac tggattgaca
1201 tccagttgcg ctggggggac tatgattccc acgacattga gcgctacgcc cgggccaagt
1261 tcctggacta caccaccgac aacatgagta tctacccttc gcccacaggt gtactcatcg
1321 ccattgacct ggcctataac ttgcacagtg cctatggaaa ctggttccca ggcagcaagc
1381 ctctcataca acaggccatg gccaagatca tgaaggcaaa ccctgccctg tatgtgttac
1441 gtgaacggat ccgcaagggg ctacagctct attcatctga acccactgag ccttatttgt
1501 cttctcagaa ctatggtgag ctcttctcca accagattat ctggtttgtg gatgacacca
1561 acgtctacag agtgactatt cacaagacct ttgaagggaa cttgacaacc aagcccatca
1621 acggagccat cttcatcttc aacccacgca cagggcagct gttcctcaag ataatccaca
1681 cgtccgtgtg ggcgggacag aagcgtttgg ggcagttggc taagtggaag acagctgagg
1741 aggtggccgc cctgatccga tctctgcctg tggaggagca gcccaagcag atcattgtca
1801 ccaggaaggg catgctggac ccactggagg tgcacttact ggacttcccc aatattgtca
1861 tcaaaggatc ggagctccaa ctccctttcc aggcgtgtct caaggtggaa aaattcgggg
1921 atctcatcct taaagccact gagccccaga tggttctctt caacctctat gacgactggc
1981 tcaagactat ttcatcttac acggccttct cccgtctcat cctgattctg cgtgccctac
2041 atgtgaacaa cgatcgggca aaagtgatcc tgaagccaga caagactact attacagaac
2101 cacaccacat ctggcccact ctgactgacg aagaatggat caaggtcaag gtgcagctca
2161 aggatctgat cttggctgac tacggcaaga aaaacaatgt gaacgtggca tcactgacac
2221 aatcagaaat tcgagacatc atcctgggta tggagatctc ggcaccgtca cagcagcggc
2281 agcagatcgc tgagatcgag aagcagacca aggaacaatc gcagctgacg gcaacacaga
2341 ctcgcactgt caacaagcat ggcgatgaga tcatcacctc caccaccagc aactatgaga
2401 cccagacttt ctcatccaag actgagtgga gggtcagggc catctctgct gccaacctgc
2461 acctaaggac caatcacatc tatgtttcat ctgacgacat caaggagact ggctacacct
2521 acatccttct caagaatgtg cttaagaagt tcatctgcat atctgacctt cgggcccaaa
2581 ttgcaggata cctatatggg gtgagcccac cagataaccc ccaggtgaag gagatccgct
2641 gcattgtgat ggtgccgcag tggggcactc accagaccgt gcacctgcct ggccagctgc
2701 cccagcatga gtacctcaag gagatggaac ccttaggttg gatccacact cagcccaatg
2761 agtccccgca gttatcaccc caggatgtca ccacccatgc caagatcatg gctgacaacc
2821 catcttggga tggcgagaag accattatca tcacatgcag cttcacgcca ggctcctgta
2881 cactgacggc ctacaagctg acccccagtg gctacgaatg gggccgccag aacacagaca
2941 agggcaacaa ccccaagggc tacctgcctt cacactatga gagggtgcag atgctgctgt
3001 cggaccgttt ccttggcttc ttcatggtcc ctgcccagtc ctcgtggaac tacaacttca
3061 tgggtgttcg gcatgacccc aacatgaaat atgagctaca gctggcgaac cccaaagagt
3121 tctaccacga ggtgcacagg ccctctcact tcctcaactt tgctctcctg caggaggggg
3181 aggtttactc tgcggatcgg gaggacctgt atgcctgacc gtttccctgc ctcctgcttc
3241 agcctcccga ggccgaagcc tcagcccctc cagacaggcc gctgacattc agcagtttgg
3301 cctctttccc tctgtctgtg cttgtgttgt tgacctcctg atggcttgtc atcctgaata
3361 aaatataata ataaattttg tataaatagg
//