LOCUS AK296246 3458 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ59309 complete cds, highly similar to Homo
sapiens GTPase activating Rap/RanGAP domain-like 3 (GARNL3), mRNA.
ACCESSION AK296246
VERSION AK296246.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3458)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3458
/clone="BRTHA2027336"
/clone_lib="BRTHA2"
/db_xref="H-InvDB:HIT000490870"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="thalamus"
CDS 331..3306
/codon_start=1
/note="highly similar to Homo sapiens GTPase activating
Rap/RanGAP domain-like 3 (GARNL3), mRNA"
/protein_id="BAH12292.1"
/transl_table=1
/translation="MKSSVSEDLGCRRGDFSRKHYGSVELLISSDADGAIQRAGRFRV
ENGSSDENATALPGTWRRTDVHLENPEYHTRWYFKYFLGQVHQNYIGNDAEKSPFFLS
VTLSDQNNQRVPQYRAILWRKTGTQKICLPYSPTKTLSVKSILSAMNLDKFEKGPREI
FHPEIQKDLLVLEEQEGSVNFKFGVLFAKDGQLTDDEMFSNEIGSEPFQKFLNLLGDT
ITLKGWTGYRGGLDTKNDTTGIHSVYTVYQGHEIMFHVSTMLPYSKENKQQVERKRHI
GNDIVTIVFQEGEESSPAFKPSMIRSHFTHIFALVRYNQQNDNYRLKIFSEESVPLFG
PPLPTPPVFTDHQEFRDFLLVKLINGEKATLETPTFAQKRRRTLDMLIRSLHQDLMPD
LHKNMLNRRSFSDVLPESPKSARKKEEARQAEFVRIGQALKLKSIVRGDAPSSLAASG
ICKKEPWEPQCFCSNFPHEAVCADPWGQALLVSTDAGVLLVDDDLPSVPVFDRTLPVK
QMHVLETLDLLVLRADKGKDARLFVFRLSALQKGLEGKQAGKSRSDCRENKLEKTKGC
HLYAINTHHSRELRIVVAIRNKLLLITRKHNKPSGVTSTSLLSPLSESPVEEFQYIRE
ICLSDSPMVMTLVDGPAEESDNLICVAYRHQFDVVNESTGEAFRLHHVEANRVNFVAA
IDVYEDGEAGLLLCYNYSCIYKKVCPFNGGSFLVQPSASDFQFCWNQAPYAIVCAFPY
LLAFTTDSMEIRLVVNGNLVHTAVVPQLQLVASRSDIYFTATAAVNEVSSGGSSKGAS
ARNSPQTPPGRDTPVFPSSLGEGEIQSKNLYKIPLRNLVGRSIERPLKSPLVSKVITP
PTPISVGLAAIPVTHSLSLSRMEIKEIASRTRRELLGLSDEGGPKSEGAPKAKSKPRK
RLEESQGGPKPGAVRSSSSDRIPSGSLESASTSEANPEGHSASSDQDPVADREGSPVS
GSSPFQLTAFSDEDIIDLK"
BASE COUNT 939 a 821 c 826 g 872 t
ORIGIN
1 actagaagca agaatgtagc ctgggtaata tctggaacac tttcaaactg catgcattga
61 tgtgttgccc attttcagct aagagaggga ggactacaaa aggttaaatt tctcatataa
121 gattaattca gccatctctg tgaaatggtg gaagcagaat gccattagac tctctaatct
181 catttctctc atgctgtctt tcttggagcc tgtcaaacag tgtcctggca gagagtcagt
241 tctctggttg ctaaacatca gagtcagtct ctttctgcat gtgccaagag ggctgtaatt
301 tagaaaatgc aacctacctt ttaaggaagg atgaaaagct ctgtctcgga agacctaggc
361 tgtagacgtg gggatttcag taggaaacat tatggatctg tggagctgct tatttccagt
421 gatgctgatg gagccatcca aagggctgga agattcagag tggaaaatgg ctcttcagat
481 gagaatgcaa ctgccctgcc tggtacttgg cgaagaacag acgtgcactt agagaaccca
541 gaataccaca ccagatggta tttcaaatat tttttaggac aagtccatca gaactacatt
601 ggaaacgatg ccgagaagag ccctttcttc ttgtccgtga ccctttctga ccaaaacaat
661 caacgtgtcc ctcaataccg tgcaattctt tggagaaaaa caggtaccca gaaaatatgc
721 cttccctaca gtcccacaaa aactctttct gtgaagtcca tcttaagtgc catgaatctg
781 gacaaatttg agaaaggccc cagggaaatt tttcatcctg aaatacaaaa ggacttgctg
841 gttcttgaag aacaagaggg ctctgtgaat ttcaagtttg gggttctttt tgccaaagat
901 gggcagctca ctgatgatga gatgttcagc aatgaaattg gaagcgagcc ttttcaaaaa
961 tttttaaatc ttctgggtga cacaatcact ctaaagggct ggacgggcta ccgtggcggt
1021 ctggatacca aaaatgatac cacagggata cattcagttt atactgtgta ccaagggcat
1081 gagatcatgt ttcatgtttc caccatgttg ccatattcca aagagaacaa acagcaggtg
1141 gaaaggaaac gccacattgg aaacgatatc gtcaccattg tgttccaaga aggagaggaa
1201 tcttctcctg cctttaagcc ttccatgatc cgctcccact ttacacatat ttttgcctta
1261 gtgagataca atcaacaaaa tgacaattac aggctgaaaa tattttcaga agagagcgta
1321 ccactctttg gccctccctt gccaactcca ccagtgttta cagaccacca ggaattcagg
1381 gactttttgc tagtgaaatt aattaatggt gaaaaagcca ctttggaaac cccaacattt
1441 gcccagaaac gtcggcgtac cctggatatg ttgattagat ctttacacca ggatttgatg
1501 ccagatttgc ataagaacat gcttaataga cgatctttta gtgatgtctt accagagtca
1561 cccaagtcag cgcggaagaa agaggaggcc cgccaggcgg agtttgttag aatagggcag
1621 gcactaaaac tgaaatccat tgtgagaggg gatgctccat caagcttggc agcttcaggg
1681 atctgtaaaa aagagccgtg ggagccccag tgtttctgca gtaatttccc tcatgaagcc
1741 gtgtgtgcag atccctgggg ccaggccttg ctggtttcca ctgatgctgg cgtcttgcta
1801 gtggatgatg accttccatc agtgcccgtg tttgacagaa ctctgccagt gaagcaaatg
1861 catgtgcttg agaccctgga ccttctggtt ctcagagcag acaaaggaaa agatgctcgc
1921 ctctttgtct tcaggctaag tgctctgcaa aagggccttg aggggaagca ggctgggaag
1981 agcaggtctg actgcagaga aaacaagttg gagaaaacaa aaggctgcca cctgtatgct
2041 attaacactc accacagcag agagctgagg attgtggttg caattcggaa taaactgctt
2101 ctgatcacaa gaaaacacaa caagccaagc ggggtcacca gcacctcatt gttatctccc
2161 ctgtctgagt cacctgttga agaattccag tacatcaggg agatctgtct gtctgactct
2221 cccatggtga tgaccttagt ggatgggcca gctgaagaga gtgacaatct catctgtgtg
2281 gcttatcgac accaatttga tgtggtgaat gagagcacag gagaagcctt caggctgcac
2341 cacgtggagg ccaacagggt taattttgtt gcagctattg atgtgtacga agatggagaa
2401 gctggtttgc tgttgtgtta caactacagt tgcatctata aaaaggtttg cccctttaat
2461 ggtggctctt ttttggttca accttctgcg tcagatttcc agttctgttg gaaccaggct
2521 ccctatgcaa ttgtctgtgc tttcccgtat ctcctggcct tcaccaccga ctccatggag
2581 atccgcctgg tggtgaacgg gaacctggtc cacactgcag tcgtgccgca gctgcagctg
2641 gtggcctcca ggtcggatat atacttcaca gcaactgcag ctgtgaatga ggtctcatct
2701 ggaggcagct ccaagggggc cagtgcccga aattctcctc agacaccccc gggccgagat
2761 actccagtat ttccttcttc cctgggggaa ggtgaaattc aatcaaaaaa tctgtacaag
2821 attccactta gaaacctcgt gggcagaagc atcgaacgac ctctgaagtc acccttagtc
2881 tccaaggtca tcaccccacc cactcccatc agtgtgggcc ttgctgccat tccagtcacg
2941 cactccttgt ccctgtctcg catggagatc aaagaaatag caagcaggac ccgcagggaa
3001 ctactgggcc tctcggatga aggtggaccc aagtcagaag gagcgccaaa ggccaaatca
3061 aaaccccgga agcggttaga agaaagccaa ggaggcccca agccaggggc agtgaggtca
3121 tctagcagtg acaggatccc atcaggctcc ttggaaagtg cttctacttc cgaagccaac
3181 cctgaggggc actcagccag ctctgaccag gaccctgtgg cagacagaga gggcagcccg
3241 gtctccggca gcagcccctt ccagctcacg gctttctccg atgaagacat tatagacttg
3301 aagtaacaga gttgaatctc atttgccatc tttagttttc ttatggaggt ttatactctt
3361 taaacagttc tgatgtaatt tctcaacaaa atgtggcttt tagcctgtca gtgatctatt
3421 ggaccaaacc ttctgcacac tcggccagtt ccctctcc
//