LOCUS AK296217 2519 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ53434 complete cds, highly similar to
Neuroligin-3 precursor.
ACCESSION AK296217
VERSION AK296217.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2519)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2519
/clone="BRTHA2021866"
/clone_lib="BRTHA2"
/db_xref="H-InvDB:HIT000490841"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="thalamus"
CDS 41..2116
/codon_start=1
/note="highly similar to Neuroligin-3 precursor"
/protein_id="BAH12284.1"
/transl_table=1
/translation="MLPVWFTANLDIVATYIQEPNEDCLYLNVYVPTEDDIRDSGAKP
VMVYIHGGSYMEGTGNMIDGSILASYGNVIVITLNYRVGVLGFLSTGDQAAKGNYGLL
DQIQALRWVSENIAFFGGDPRRITVFGSGIGASCVSLLTLSHHSEGLFQRAIIQSGSA
LSSWAVNYQPVKYTSLLADKVGCNVLDTVDMVDCLRQKSAKELVEQDIQPARYHVAFG
PVIDGDVIPDDPEILMEQGEFLNYDIMLGVNQGEGLKFVEGVVDPEDGVSGTDFDYSV
SNFVDNLYGYPEGKDTLRETIKFMYTDWADRDNPETRRKTLVALFTDHQWVEPSVVTA
DLHARYGSPTYFYAFYHHCQSLMKPAWSDAAHGDEVPYVFGVPMVGPTDLFPCNFSKN
DVMLSAVVMTYWTNFAKTGDPNKPVPQDTKFIHTKANRFEEVAWSKYNPRDQLYLHIG
LKPRVRDHYRATKVAFWKHLVPHLYNLHDMFHYTSTTTKVPPPDTTHSSHITRRPNGK
TWSTKRPAISPAYSNENAQGSWNGDQDAGPLLVENPRDYSTELSVTIAVGASLLFLNV
LAFAALYYRKDKRRQEPLRQPSPQRGAGAPELGAAPEEELAALQLGPTHHECEAGPPH
DTLRLTALPDYTLTLRRSPDDIPLMTPNTITMIPNSLVGLQTLHPYNTFAAGFNSTGL
PHSHSTTRV"
BASE COUNT 594 a 805 c 617 g 503 t
ORIGIN
1 agtgtgcccc cagaacatcc acacagctgt gcccgaagtc atgctgccgg tctggttcac
61 tgccaacttg gatatcgtcg ctacttacat ccaggagccc aacgaagact gtctctacct
121 gaacgtctat gtgccgacgg aggatgacat ccgggacagt ggtgctaaac ccgtcatggt
181 ctacatccac ggaggctctt acatggaagg gacaggcaac atgattgatg gcagcatcct
241 cgccagttat ggcaatgtca tcgtcatcac cctcaactat cgggttggag tgctaggttt
301 cctgagtact ggagatcagg ctgccaaggg caactatggg ctccttgacc agatccaggc
361 cctccgctgg gtgagcgaga atattgcctt cttcggggga gacccccgcc ggatcactgt
421 ctttggctcg ggcattggtg catcctgcgt cagcctcctc acgttgtcac atcactcaga
481 gggacttttc cagagagcca tcatccaaag tggctctgct ctgtccagct gggctgtgaa
541 ctaccaacca gtgaagtaca ccagcctgct ggcagacaaa gtgggctgta atgtgctgga
601 caccgtggat atggtggact gtcttcggca aaagagtgcc aaggagctgg tagagcagga
661 catccagcca gcccgctacc acgtggcctt tggccctgtg attgatggtg atgtcattcc
721 tgatgaccct gagatcctca tggagcaggg cgagttcctc aactatgaca tcatgctagg
781 tgtcaaccag ggcgagggtc tcaagtttgt ggaaggggtg gtggaccctg aggatggtgt
841 ctctggcact gactttgact attccgtctc caattttgtg gacaatctgt atggctatcc
901 tgagggtaag gacaccctgc gagagaccat caagttcatg tatacagact gggcagaccg
961 tgacaaccct gagacccgcc gtaaaacact ggtggcactc ttcactgacc accagtgggt
1021 ggagccctca gtggtgacag ccgatctgca tgcccgctac ggctcgccta cctacttcta
1081 cgccttctat catcactgcc agagcctcat gaagcctgct tggtcagatg cagctcatgg
1141 ggatgaagta ccctatgttt ttggggttcc tatggtaggc cccactgacc ttttcccctg
1201 caacttctcc aagaatgatg ttatgctcag tgctgtcgtc atgacctatt ggaccaactt
1261 tgccaagact ggggatccca acaagccggt cccccaggac accaagttca ttcacaccaa
1321 ggccaaccgc tttgaggaag tggcctggtc caaatacaat ccccgagacc agctctacct
1381 tcacatcggg ctgaaaccaa gggtccgaga tcattaccgg gccactaagg tggccttttg
1441 gaaacatctg gtgccccacc tatacaacct gcatgacatg ttccactata cgtccaccac
1501 caccaaagtg ccgcctccgg ataccaccca cagctcccac atcacccgca ggcccaatgg
1561 caagacctgg agcaccaagc ggccagccat ctcacctgcc tacagcaacg agaatgccca
1621 ggggtcctgg aacggggacc aggatgcagg gccactcctg gtggagaacc ctcgtgacta
1681 ctccactgaa ttaagtgtca ccatcgccgt gggggcctcc ctcctgttcc ttaacgttct
1741 ggccttcgct gccctctact accgtaagga caaacggcgc caggagcccc tgcggcagcc
1801 tagccctcag cggggagccg gggccccgga gttgggagct gctccagagg aggagctggc
1861 agcattacaa ctgggcccca cccaccacga gtgtgaggcc ggtccccccc atgacacgct
1921 gcgcctcact gcattgcccg actacaccct gaccctgcgg cgctccccgg atgacatccc
1981 actcatgacc cccaacacca tcactatgat ccccaactcc ctggtagggc tgcagacatt
2041 gcacccctat aacacctttg ccgcagggtt caacagtacc gggctgcccc actcacactc
2101 cactacccgg gtatagctcc aactcagagc acagccaatc tccaggctcc ctccctccca
2161 gatccaggaa cacatgcaca cacacacaca cacacacgca gacacacaca cacacacaca
2221 tatatgtata cgcacgcacc cacaccctac agcagatcca cctgcacaaa catagacaga
2281 tgtggacatg cacccgcatg tacaaaaaca caaatacgga agtaaacctg aacaaaccct
2341 ttaaatgggg acgcagatga gtcctcggta aaccgaggac ccatgaaaca gcagctgaag
2401 ccagctccct gaatttgacc acagacactc ctggggggcc tgaaagcaac agctggacac
2461 ccccttggtg ctcgccttcg gcctctcttg gaactgcacc accgaccaac tccagactt
//