LOCUS AK296100 2188 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ60274 complete cds, moderately similar to
Homo sapiens tripartite motif-containing 60 (TRIM60), mRNA.
ACCESSION AK296100
VERSION AK296100.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2188)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2188
/clone="BRTHA2005584"
/clone_lib="BRTHA2"
/db_xref="H-InvDB:HIT000490724"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="thalamus"
CDS 485..1900
/codon_start=1
/note="moderately similar to Homo sapiens tripartite
motif-containing 60 (TRIM60), mRNA"
/protein_id="BAG58853.1"
/transl_table=1
/translation="MEFVTALADLRAEASCPICLDYLKDPVTISCGHNFCLSCIIMSW
KDLHDSFPCPFCHFCCPERKFISNPQLGSLTEIAKQLQIRSKKRKRQEEKHVCKKHNQ
VLTFFCQKDLELLCPRCSLSTDHQHHCVWPIKKAASYHRKKLEEYNAPWKERVELIEK
VITMQTRKSLELKKKVKHRAEEVKSEFEQLRLFLQNEQETVLRQLQDEEMDILAQLNE
SLTKFSDYTSSLKYLLKEIESIYVKSELELLANVKDIYHRYKNLKFPELFLFKLKKYG
YHLPPQYSGLDKIIKRFQVDVILDPETAHRKLIVSEDRKTVRYGNTTQNVPHNPRRFY
LLPAVLGSKGYSCGRQYWEVEVKDKPEWILGVCNDCLPRRRKSQPILVQDGLWGIWRS
SQNNYIVLGHREIILLPQVIPSKIGIFLDYEMNEVSFYNLNDRSLLYTFNDNFTGALW
PYFYTGTDSKPLKISTVTDSE"
BASE COUNT 697 a 387 c 442 g 662 t
ORIGIN
1 gtatggcgtg aatctctgca atatgagaat cttgtttttc caagaacttc caccccatga
61 ttttagcatt cattgatgat tcttgtgtga acgtttaata catttgtgat tatggaattt
121 taacgtggtg tcttttctta ctcataggaa ggattcccta tcttggacct gaggctgctt
181 tcttgaagaa aacttgactt tatttcattt agtgggaaga gcagcagccc agctattaag
241 ttctaatatg caataggctg caggctgtga agtgttcgtg gcagtagact ctgaagctaa
301 ggagctgagg gcttaacaag tttctagaag ctgccatcaa catgccaagt cagtaaaact
361 gatagttgat cagatttcaa ggtctgggga gtatatccac tgtgtactgg gtcttgagct
421 ctagagagct aggccttgct aaaataaaag aattacctta cctaccatct ttgttcaagt
481 ctcaatggaa tttgttacgg ccctggctga cctccgagca gaggctagct gtcccatctg
541 tctggactac ttgaaagacc cagtgaccat cagctgtggg cataacttct gtctctcctg
601 catcattatg tcctggaagg atctacatga tagtttcccc tgcccctttt gccacttttg
661 ctgtccagaa aggaaattta taagcaatcc ccagctgggt agtttgactg aaattgctaa
721 gcaactccag ataagaagca agaagaggaa gaggcaggaa gagaagcatg tgtgtaagaa
781 gcataatcag gttttgactt tcttctgtca gaaagaccta gagcttttat gtccaaggtg
841 cagtttgtcc actgatcacc agcatcactg tgtttggccc ataaagaagg ctgcctccta
901 tcataggaaa aaactggagg aatacaatgc accgtggaag gagagagtgg aactaattga
961 aaaagtcata actatgcaaa ccaggaaatc actggaactg aagaaaaagg taaaacatag
1021 ggcagaagaa gtcaagtctg aatttgagca acttaggtta tttctccaaa atgagcaaga
1081 gactgttctt aggcaattac aagatgaaga gatggatatt ttagcacaac taaatgaaag
1141 cctaacaaaa ttttcagatt atacctcctc attaaaatat ctactaaagg agatagagag
1201 catatatgtg aagtcagaac tggaattact ggcaaatgtt aaggatatct atcacagata
1261 taagaattta aaattccctg agctgttttt attcaaatta aaaaaatatg gttaccatct
1321 gcctccacaa tattctggcc tagacaaaat tatcaagcga tttcaagtag atgtaattct
1381 agatcctgaa acagcacatc gtaaacttat agtctcagaa gatagaaaaa ctgtgcgcta
1441 tggaaataca acacaaaatg tacctcataa cccaagaaga ttttatctcc tcccagctgt
1501 tctgggttct aagggatata gttgtggcag gcagtactgg gaagtagaag tgaaagacaa
1561 gcctgaatgg attcttggtg tctgtaatga ctgtcttccc agaaggagga agagtcaacc
1621 aattttagta caggatggat tatggggaat ttggcgatct agtcagaata attatattgt
1681 attgggccac agggaaatta ttctgctgcc acaagtaatt cctagtaaga ttggcatttt
1741 tttagactat gaaatgaatg aagtttcctt ttataatttg aatgatagat ctcttctcta
1801 tacttttaat gataatttta caggagcact ttggccttat ttttatactg gaactgactc
1861 aaaacctctt aaaatttcta cagtaacaga ttctgaatga attattagaa gactcagttt
1921 ctttcaccta gtagacataa ctgagccagt gaatctagtt ttggctcttc tgtattttgt
1981 ccagtttttc ccataagcaa tattttttta tctcagtttc agtaacttcc aaaaaatgtg
2041 attatgggac ctactttata ttaaattatg gggtcagtga caaggtactt tagaaattct
2101 acagtaaaat acttgaaaca tatattactg aagaaatgta ttatgtaaga aaatctatta
2161 cttttgtaat tgccaataaa agcccagt
//