LOCUS AK296043 1393 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ50548 complete cds, highly similar to
Squalene synthetase (EC 2.5.1.21).
ACCESSION AK296043
VERSION AK296043.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1393)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1393
/clone="BRSTN2014223"
/clone_lib="BRSTN2"
/db_xref="H-InvDB:HIT000490667"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="subthalamic nucleus"
CDS 95..1219
/codon_start=1
/note="highly similar to Squalene synthetase (EC
2.5.1.21)"
/protein_id="BAG58807.1"
/transl_table=1
/translation="MEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCY
KYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHS
FLYQPDWRFMESKEKDRQVLEDFPTYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTER
ANSMGLFLQKTNIIRDYLEDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNE
LITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKG
QAVTLMMDATNMPAVKAIIYQYMEEIYHRIPDSDPSSSKTRQIISTIRTQNLPNCQLI
SRSHYSPIYLSFVMLLAALSWQYLTTLSQVTEDYVQTGEH"
BASE COUNT 360 a 350 c 345 g 338 t
ORIGIN
1 tcgaagcacc tactccacag gtccagccgg ccggtgagcg cctggggacc gcagaggtga
61 gagtcgcgcc cgggagtccg ccgcctgcgc caggatggag ttcgtgaaat gccttggcca
121 ccccgaagag ttctacaacc tggtgcgctt ccggatcggg ggcaagcgga aggtgatgcc
181 caagatggac caggactcgc tcagcagcag cctgaaaact tgctacaagt atctcaatca
241 gaccagtcgc agtttcgcag ctgttatcca ggcgctggat ggggaaatgc gcaacgcagt
301 gtgcatattt tatctggttc tccgagctct ggacacactg gaagatgaca tgaccatcag
361 tgtggaaaag aaggtcccgc tgttacacaa ctttcactct ttcctttacc aaccagactg
421 gcggttcatg gagagcaagg agaaggatcg ccaggtgctg gaggacttcc caacgtactg
481 ccactatgtt gctgggctgg tcggaattgg cctttcccgt cttttctcag cctcagagtt
541 tgaagacccc ttagttggtg aagatacaga acgtgccaac tctatgggcc tgtttctgca
601 gaaaacaaac atcatccgtg actatctaga agaccagcaa ggaggaagag agttctggcc
661 tcaagaggtt tggagcaggt atgttaagaa gttaggggat tttgctaagc cggagaatat
721 tgacttggcc gtgcagtgcc tgaatgaact tataaccaat gcactgcacc acatcccaga
781 tgtcatcacc tacctttcga gactcagaaa ccagagtgtg tttaacttct gtgctattcc
841 acaggtgatg gccattgcca ctttggctgc ctgttataat aaccagcagg tgttcaaagg
901 ggcagtgaag attcggaaag ggcaagcagt gaccctgatg atggatgcca ccaatatgcc
961 agctgtcaaa gccatcatat atcagtatat ggaagagatt tatcatagaa tccccgactc
1021 agacccatct tctagcaaaa caaggcagat catctccacc atccggacgc agaatcttcc
1081 caactgtcag ctgatttccc gaagccacta ctcccccatc tacctgtcgt ttgtcatgct
1141 tttggctgcc ctgagctggc agtacctgac cactctctcc caggtaacag aagactatgt
1201 tcagactgga gaacactgac cccaaatttg tccatagctg aagtccacca taaagtggat
1261 ttactttttt tctttaagga tggatgttgt gttctcttta tttttttcct actactttaa
1321 tccctaaaag aacgctgtgt ggctgggacc tttaggaaag tgaaatgcag gtgagaagaa
1381 cctaaacatg aaa
//