LOCUS AK295979 965 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ57843 complete cds, highly similar to Homo
sapiens neurochondrin (NCDN), transcript variant 3, mRNA.
ACCESSION AK295979
VERSION AK295979.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 965)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..965
/clone="BRSSN2016933"
/clone_lib="BRSSN2"
/db_xref="H-InvDB:HIT000490603"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="substantia nigra"
CDS 219..773
/codon_start=1
/note="highly similar to Homo sapiens neurochondrin
(NCDN), transcript variant 3, mRNA"
/protein_id="BAG58754.1"
/transl_table=1
/translation="MNTLMTSLPALVQQQGRLLLAANVATLGLLMARLLSTSPALQGT
PASRGFFAAAILFLSQSHVARATPGSDQAVLALSPEYEGIWADLQELWFLGMQAFTGC
VPLLPWLAPAALRSRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREAM
RLQAGEETASHYRMAALEQCLSEP"
BASE COUNT 164 a 334 c 288 g 179 t
ORIGIN
1 ttgaagatgg gccccgggag atcctgatca aggaaggggc cccctcgctt ctgtgcaagt
61 atttcctgca gcagtgggaa ctcacatccc ctggccacga cacctcggtg ctgcctgaca
121 gcgtggagat tggcctgcag acctgctgcc acatcttcct caacctcgtg gtcaccgcac
181 cggggctgat caagcgtgac gcctgcttca catctctaat gaacaccctc atgacgtcgc
241 taccagcact agtgcagcaa cagggaaggc tgcttctggc tgctaatgtg gccaccctgg
301 ggctcctcat ggcccggctc cttagcacct ctccagctct tcagggaaca ccagcatccc
361 gagggttctt cgcagctgcc atcctcttcc tatcacagtc ccacgtggcg cgggccaccc
421 cgggctcaga ccaggcagtg ctagccctgt cccctgagta tgagggcatc tgggccgacc
481 tgcaggagct ctggttcctg ggcatgcagg ccttcaccgg ctgtgtgcct ctgctgccct
541 ggctggcccc cgctgccctg cgctcccgct ggccgcagga gctgctccag ctgctaggca
601 gtgtcagccc caactctgtc aagcccgaga tggtggccgc ctatcagggt gtcctggtgg
661 agctggcgcg ggccaaccgg ctgtgccggg aggccatgag gctgcaggcg ggcgaggaga
721 cggccagcca ctaccgcatg gctgccttgg agcagtgcct gtcagagccc tgaggggtgt
781 ccaccgggga cagacccagg ggcgggcaga gagggaagga gggaggaggc atcttccctg
841 aagcccccaa tctggccccc ccctccccag acttcctccc caaaacaccc cagctttctg
901 gcttttctga gggcaagggc atggtgccca cccctcaagt gtaaggaact gcgttccgcc
961 cctca
//