LOCUS AK295912 2491 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ56092 complete cds, highly similar to
Pentatricopeptide repeat protein 1.
ACCESSION AK295912
VERSION AK295912.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2491)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2491
/clone="BRSSN2002293"
/clone_lib="BRSSN2"
/db_xref="H-InvDB:HIT000490536"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="substantia nigra"
CDS 24..2273
/codon_start=1
/note="highly similar to Pentatricopeptide repeat protein
1"
/protein_id="BAG58700.1"
/transl_table=1
/translation="MASVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGPGG
TGKPEMDFVRLARLFARARPMGLFILQHLDPCRARWAGGREGLMRPMWAPFSSSSSQL
PLGQERQENTGSLGSDPSHSNSTATQEEDEEEEESFGTLSDKYSSRRLFRKSAAQFHN
LRFGERRDEQMEPEPKLWRGRRNTPYWYFLQCKHLIKEGKLVEALDLFERQMLKEERL
QPMESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAESPWKDSA
LQSALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETF
SFLLMGCIQDKKTGFRYALQVWRLMLSLGLQPSRDSYNLLLVAARDCGLGDPQVASEL
LLKPREEATVLQPPVSRQRPRRTAQAKAGNLMSAMLHVEALERQLFLEPSQALGPPEP
PEARVPGKAQPEVDTKAEPSHTAALTAVALKPPPVELEVNLLTPGAVPPTVVSFGTVT
TPADRLALIGGLEGFLSKMAEHRQQPDIRTLTLLAEVVESGSPAESLLLALLDEHQVE
ADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIGCHRPKDGLQLL
TDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDMKQNRVPVNEVVIRQLEFAAQ
YPPTFDRYQGKNTYLEEIDGFRAYYKQWLTVMPAEETPHPWQKFRTKPQGDQDTGKEA
DDGCALGGR"
BASE COUNT 577 a 736 c 766 g 412 t
ORIGIN
1 acagcggaca ccaggactcc aaaatggcgt cagttgtacc agtgaaggac aagaaacttc
61 tggaggtcaa actgggggag ctgccaagct ggatcttgat gcgggacttc agtcctagtg
121 gcattttcgg agcgtttcaa agaggccctg gagggacagg aaagccagaa atggacttcg
181 tgagactcgc tcgactgttc gccagggccc gccccatggg actgttcatc ctgcaacacc
241 tggacccctg tagagccagg tgggcaggag gcagggaggg gctgatgcgg ccaatgtggg
301 cgcccttcag cagctcctcc tctcagctgc ccctcggcca ggagcgtcag gaaaacacgg
361 gcagcctggg ctctgacccg agccactcca actccacggc cacgcaggaa gaagacgagg
421 aggaggagga gagttttggg acactctctg acaaatactc ctcccggaga ctattccgca
481 aatccgcagc ccagttccat aacctgcggt ttggggaacg gagagatgag caaatggaac
541 cggagcccaa attatggcga ggccggagaa acaccccgta ctggtacttc ttgcagtgca
601 aacacctgat caaggaaggg aagctggttg aagccctgga cctgtttgag aggcagatgc
661 tgaaggagga gcgattgcag cccatggaga gcaactacac ggtgctgatt gggggctgcg
721 ggcgggttgg ctacctgaag aaggccttca acctctacaa ccagatgaaa aagcgggacc
781 tggagccctc ggacgccacc tacacggccc tgttcaacgt ctgtgccgag tccccctgga
841 aggactcagc tctacagagc gccctgaagc tccggcagca gctgcaggcc aaaaacttcg
901 agctcaactt gaaaacatac cacgcgctgc tgaagatggc tgccaagtgc gcagacctta
961 ggatgtgcct cgatgtgttc aaggaaatca tccacaaagg gcacgtggtc acagaggaga
1021 ccttcagttt cctgctcatg ggctgcatcc aagacaagaa gacaggcttc cggtacgccc
1081 tccaggtgtg gcggctgatg ctgagtctag ggctacagcc gagccgggac agctacaacc
1141 tgctgttggt ggcagctcgg gactgtggcc taggggaccc ccaggtggcc tcagagctgc
1201 ttctgaagcc cagggaggag gcgactgtgc ttcagccccc agtgagcagg cagcggccaa
1261 ggaggacagc ccaggccaag gcaggcaacc tcatgtcagc catgctgcat gtggaggccc
1321 tggagaggca gctgtttctg gaaccttctc aggcacttgg gcctccagag cctccggaag
1381 ccagagtgcc cggcaaggcc caaccagagg tggatactaa ggcagagccc agccacacag
1441 cagccctcac cgcagtggcc ctgaagccac ctcccgtgga gctggaagtc aacctcctga
1501 cccccggggc cgttccccct acagtggtct cctttggaac ggtgaccacc ccagctgacc
1561 ggctggcctt gatagggggc ctggagggct tcctgagcaa gatggcagag cacaggcagc
1621 agcccgacat caggaccctc acgctactgg ccgaggtggt ggagtccggg agtcctgcag
1681 agtccttgct gctggccctc ctggatgagc accaggtaga ggccgacctg acattcttta
1741 acacgctggt gagaaagaag agcaagctgg gagacctgga gggggccaag gcgctgttgc
1801 cggtcctggc aaagaggggc ctcgtcccca acctgcagac attctgcaac ctggccatcg
1861 ggtgccacag gccgaaggac ggtctacagc ttctcacaga catgaagaag tcccaggtga
1921 cccccaacac tcacatctac agtgccctca tcaacgcggc catcaggaag ctgaactaca
1981 cctatctcat cagcatcttg aaggacatga agcagaacag ggtcccggtg aacgaagtgg
2041 tcatccgcca gctggagttt gcagcccagt accctcccac ctttgaccgg taccaaggga
2101 agaacaccta cctggaggag attgacggct tccgagccta ttacaagcag tggctgacag
2161 tgatgcccgc agaggaaacc ccgcacccct ggcagaagtt ccggaccaag ccccaggggg
2221 accaggacac cggcaaggag gctgatgacg gatgtgccct tgggggcagg tgatgggagc
2281 acagctggaa caatgtgctc ggcccccagt gctctgtggg agccccagga caagtgagct
2341 ggtgtcacct cctgcctggg ggaagagcca ggccctgagg aacagccgca gcgtgtcaca
2401 ggtgttggtg aggacacaca ctaggcccaa ggtgcctgtg ctcccagcag gtccaagtgc
2461 agctccagcc acctttgcgt gtcaccttca c
//