LOCUS AK295910 1676 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ56446 complete cds, highly similar to HMG
box-containing protein 1.
ACCESSION AK295910
VERSION AK295910.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1676)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1676
/clone="BRSSN2001983"
/clone_lib="BRSSN2"
/db_xref="H-InvDB:HIT000490534"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="substantia nigra"
CDS 53..1627
/codon_start=1
/note="highly similar to HMG box-containing protein 1"
/protein_id="BAG58698.1"
/transl_table=1
/translation="MATGLSEHHNMVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLEL
LQCNENLPSSPGYNSCDEHMELDDLPELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWN
QNTSDIPETTYRENEVDWLTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYA
RPPPVSSSSKSEPAFPHHHWKEETPVRHERANSESESGIFCMSSLSDDDDLGWCNSWP
STVWHCFLKGTRLCFHKGSNKEWQDVEDFARAEGCDNEEDLQMGIHKGYGSDGLKLLS
HEESVSFGESVLKLTFDPGTVEDGLLTVECKLDHPFYVKNKGWSSFYPSLTVVQHGIP
CCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFTPMDSSAVYVLSSMARQRRASLS
CGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNA
FMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLN
PDCWKRKRTNSGSQQH"
BASE COUNT 501 a 334 c 386 g 455 t
ORIGIN
1 aacccccagg gggttgaggg gagggggaag acgaagcttg aaagacttgg taatggcgac
61 gggtttgtca gagcaccata acatggtgtg ggaagtgaag acaaatcaga tgcctaatgc
121 agtacagaaa ctcctgttgg tgatggacaa gagagcctca ggaatgaatg actcattgga
181 gttgctgcag tgtaatgaga atttgccatc ttcacctgga tataactcct gtgatgaaca
241 catggagctt gatgaccttc ctgaacttca ggcagttcaa agtgatccta cccaatctgg
301 catgtaccag ctgagttcag atgtttcaca tcaagaatac ccaagatcat cttggaacca
361 aaatacctca gacataccag aaactactta ccgtgaaaat gaggtggact ggctaacaga
421 attggcaaat atcgcgacca gtccacaaag tccactgatg cagtgctcat tttacaatag
481 atcatctcct gtacacatca tagccactag caaaagttta cattcctatg cacgccctcc
541 accagtgtcc tcttcttcga agagtgaacc agccttccct catcaccatt ggaaggagga
601 aacaccagta agacacgaaa gggcaaatag tgagtcagaa tctggcattt tctgcatgtc
661 ctccctgtca gatgatgatg atttgggatg gtgcaattcc tggccttcaa ctgtctggca
721 ctgttttttg aaaggcacac gactgtgctt tcataaggga agcaataagg aatggcaaga
781 tgttgaagat tttgctagag ctgaaggctg tgataatgag gaagatcttc aaatgggcat
841 tcacaagggc tatggttctg atggtctaaa gttgttatca catgaagaaa gtgtatcatt
901 tggcgagtct gtactgaagt tgacttttga tcctggtaca gtagaagatg gtttacttac
961 cgtagagtgt aagctggacc accctttcta tgttaaaaat aaaggttggt catcatttta
1021 tccaagcttg actgtggtac agcatggcat tccatgttgt gaagttcata ttggcgatgt
1081 atgtctacct cctggacacc ccgatgccat taattttgat gattcaggtg tttttgatac
1141 atttaaaagc tatgacttca cacctatgga ttcttctgca gtttatgtgt taagtagtat
1201 ggctcgccag cgtcgtgcat ctttgtcttg tggaggacct ggtggtcaag actttgcaag
1261 atctggattc agtaaaaact gtggctcacc tggatcatca cagctctctt ccaattcttt
1321 gtatgctaaa gctgtcaaaa accacagctc agggactgtg agtgccactt ctcctaataa
1381 gtgcaaaaga ccaatgaatg ccttcatgct ttttgccaaa aaatacagag ttgaatatac
1441 tcagatgtat ccagggaaag ataacagagc cataagtgtg atccttggtg acaggtggaa
1501 gaaaatgaag aatgaagaga gaagaatgta cacattagaa gcaaaggctt tggctgaaga
1561 acagaaacgt ttaaatcctg actgttggaa gaggaaaaga accaattcag gctcacaaca
1621 acattaaacc aggatgctta tgttcttaag tctatatttg catatacatt gactct
//