LOCUS AK295832 3427 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ56444 complete cds, highly similar to Homo
sapiens hect domain and RLD 6 (HERC6), transcript variant 1, mRNA.
ACCESSION AK295832
VERSION AK295832.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3427)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3427
/clone="BRHIP3034175"
/clone_lib="BRHIP3"
/db_xref="H-InvDB:HIT000490456"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="hippocampus"
CDS 94..3162
/codon_start=1
/note="highly similar to Homo sapiens hect domain and RLD
6 (HERC6), transcript variant 1, mRNA"
/protein_id="BAG58647.1"
/transl_table=1
/translation="MYFCWGADSRELQRRRTAGSPGAELLQAASGERHSLLLLTNHRV
LSCGDNSRGQLGRRGAQRGELPEPIQALETLIVDLVSCGKEHSLAVCHKGRVFAWGAG
SEGQLGIGEFKEISFTPKKIMTLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQL
GLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSGR
NVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLGYSPTPEK
RGPQLVERIDGLVSQIDCGSYHTLAYVHTTGQVVSFGHGPSDTSKPTHPEALTENFDI
SCLISAEDFVDVQVKHIFAGTYANFVTTHQDTSSTRAPGKTLPEISRISQSMAEKWIA
VKRRSTEHEMAKSEIRMIFSSPACLTASFLKKRGTGETTSIDVDLEMARDTFKKLTKK
EWISSMITTCLEDDLLRALPCHSPHQEALSVFLLLPECPVMHDSKNWKNLVVPFAKAV
CEMSKQSLQVLKKCWAFLQESSLNPLIQMLKAAIISQLLHQTKTEQDHCNVKALLGMM
KELHKVNKANCRLPENTFNINELSNLLNFYIDRGRQLFRDNHLIPAETPSPVIFSDFP
FIFNSLSKIKLLQADSHIKMQMSEKKAYMLMHETILQKKDEFPPSPRFILRVRRSRLV
KDALRQLSQAEATDFCKVLVVEFINEICPESGGVSSEFFHCMFEEMTKPEYGMFMYPE
MGSCMWFPAKPKPEKKRYFLFGMLCGLSLFNLNVANLPFPLALYKKLLDQKPSLEDLK
ELSPRLGKSLQEVLDDAADDIGDALCIRFSIHWDQNDVDLIPNGISIPVDQTNKRDYV
SKYIDYIFNVSVKAVYEEFQRGFYRVCEKEILRHFYPEELMTAIIGNTDYDWKQFEQN
SKYEQGYQKSHPTIQLFWKAFHKLTLDEKKKFLFFLTGRDRLHARGIQKMEIVFRCPE
TFSERDHPTSITCHNILSLPKYSTMERMEEALQVAINNNRGFVSPMLTQS"
BASE COUNT 1011 a 728 c 826 g 862 t
ORIGIN
1 aggaaatcat cgcgcaccca gtcaccagcg ttcgggagcc tgtcgcagcg ggaccgacgg
61 aatccggagc aggcgacagg gcgcagaagc gggatgtact tctgttgggg cgccgactcc
121 agggagctgc agcgccggag gacggcgggc agccccgggg ctgagctact gcaggcggcc
181 agcggggagc gccactctct gctgctgctg accaaccaca gggtcctctc gtgcggagac
241 aacagcaggg gtcagctggg acgcaggggc gcgcagcgcg gggagctgcc agaaccaatt
301 caggcattgg aaaccctaat tgttgatctc gtgagctgcg ggaaggagca ctccctggct
361 gtgtgccaca aaggaagggt cttcgcatgg ggagctggtt ctgaagggca gctggggatt
421 ggagaattca aggaaataag tttcacacct aagaaaataa tgactctgaa tgatataaaa
481 ataatacaag tttcctgtgg acactaccac tccctggcat tatcaaaaga tagccaagtg
541 ttttcgtggg gaaagaacag ccatgggcag ctgggcttgg ggaaggagtt cccctcccaa
601 gccagcccgc agagggtgag gtccctggag gggatcccac tggctcaggt ggctgccgga
661 ggggctcaca gctttgccct gtctctctgt gggacttcgt ttggctgggg aagtaacagt
721 gccgggcagc tggccctcag tgggcgtaat gtcccagtgc aaagcaacaa gcctctctca
781 gtcggtgcac tgaagaatct aggtgtggtt tatatcagct gtggtgatgc acacactgcg
841 gtgcttaccc aggacgggaa agtgttcaca tttggagaca atcgctctgg acagctggga
901 tacagcccca ctcctgagaa gagaggtcca caacttgtgg aaagaattga tggcctagtt
961 tcgcagatag attgtggaag ttatcacacc ctggcatatg tgcacaccac tggtcaggtg
1021 gtatcttttg gtcatggacc aagtgacaca agcaagccaa ctcatccgga ggccctgaca
1081 gagaactttg acattagctg cctgatttct gctgaagact tcgtggatgt tcaagtcaaa
1141 cacatttttg ctggaacata tgccaacttt gtgacaactc atcaggatac tagttccaca
1201 cgtgctcccg ggaaaaccct gccagaaata agccgaatta gccagtccat ggcagaaaaa
1261 tggatagcag tgaaaagaag aagtactgaa catgaaatgg ctaaaagtga aattagaatg
1321 atattttcat ctcctgcttg tctgactgca agttttttaa agaaaagagg aactggagaa
1381 acgacttcca ttgatgtgga cttagaaatg gcaagagata ccttcaagaa gttaacaaaa
1441 aaggaatgga tttcttccat gataactacg tgtctcgagg atgatctgct cagagctctt
1501 ccatgccatt ctccacacca agaagcttta tcagttttcc tcctgctccc agaatgtcct
1561 gtgatgcatg attctaagaa ctggaagaac ctggtggttc catttgcaaa ggctgtgtgt
1621 gaaatgagta aacaatcttt gcaagtccta aagaagtgtt gggcattttt gcaagaatct
1681 tctctgaatc cgctgatcca gatgcttaaa gcagccatca tctctcagct gcttcatcag
1741 actaaaaccg aacaggatca ctgtaatgtt aaagctcttt taggaatgat gaaagaactg
1801 cataaggtaa acaaagctaa ctgtcgacta ccagaaaata ctttcaacat aaatgaactc
1861 tccaacttat taaactttta tatagataga ggaagacagc tctttcggga taaccacctg
1921 atacctgcag aaacccccag tcctgttatt ttcagtgatt ttccatttat ctttaattcg
1981 ctatccaaaa ttaaattatt gcaagctgat tcacatataa agatgcagat gtcagaaaag
2041 aaagcataca tgcttatgca tgaaacaatt ctgcaaaaaa aggatgaatt tcctccatca
2101 cccagattta tacttagagt cagacgaagt cgcctggtta aagatgctct gcgtcaatta
2161 agtcaagctg aagctactga cttctgcaaa gtattagtgg ttgaatttat taatgaaatt
2221 tgtcctgagt ctggaggggt tagttcagag ttcttccact gtatgtttga agagatgacc
2281 aagccagaat atggaatgtt catgtatcct gaaatgggtt cctgcatgtg gtttcctgcc
2341 aagcctaaac ctgagaagaa aagatatttc ctctttggaa tgctgtgtgg actctcctta
2401 ttcaatttaa atgttgctaa ccttcctttc ccactggctc tgtataaaaa acttctggac
2461 caaaagccat cattggaaga tttaaaagaa ctcagtcctc ggttggggaa gagtttgcaa
2521 gaagttctag atgatgctgc tgatgacatt ggagatgcgc tctgcatacg cttttctata
2581 cactgggacc aaaatgatgt tgacttaatt ccaaatggga tctccatacc tgtggaccaa
2641 accaacaaga gagactatgt ttctaagtat attgattaca ttttcaacgt ctctgtaaaa
2701 gcagtttatg aggaatttca gagaggattt tatagagtct gtgagaagga gatacttaga
2761 catttctacc ctgaagaact aatgacagca atcattggaa atactgatta tgactggaaa
2821 cagtttgaac agaattcaaa gtatgagcaa ggataccaaa aatcacatcc tactatacag
2881 ttgttttgga aggctttcca caaactaacc ttggatgaaa agaaaaaatt cctctttttc
2941 cttacaggac gtgataggct gcatgcaaga ggcatacaga aaatggaaat agtatttcgc
3001 tgtcctgaaa ctttcagtga aagagatcac ccaacatcaa taacttgtca taatattctc
3061 tccctcccta agtattctac aatggaaaga atggaggaag cacttcaagt agccatcaac
3121 aacaacagag gatttgtctc acccatgctc acacagtcat aatcacctct gagagactca
3181 gggtgggctt tctcacactt ggatccttct gttcttcctt acacctaaat aatacaagag
3241 attaatgaat agtggttaga agtagttgag ggagagattg ggggaatggg gagatgatga
3301 tgatggtcaa agggtgcaaa atctcacaca agactgaggc aggagaatag ggtacagaga
3361 tagggatcta aggatgactt ggacacactc cctggcactg aagagtctga acactggcct
3421 gtgattg
//