LOCUS AK295821 1370 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ60577 complete cds, highly similar to
Hermansky-Pudlak syndrome 1 protein.
ACCESSION AK295821
VERSION AK295821.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1370)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1370
/clone="BRHIP3032605"
/clone_lib="BRHIP3"
/db_xref="H-InvDB:HIT000490445"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="hippocampus"
CDS 228..1250
/codon_start=1
/note="highly similar to Hermansky-Pudlak syndrome 1
protein"
/protein_id="BAG58638.1"
/transl_table=1
/translation="MKCALVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALE
DQLSTLLAPVIISSMTMLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESE
GDLRRKLYVLKYLFEVHFGLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLR
EQEQCFAVEALERLIHPQLCELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLL
AFYSSHSASSLRPADLLALILLVQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSP
HSTGPTGGSSAETETDSFSLPEEYFTPAPSPGDQSSGSTIWLEGGTPPMDALQVSFSC
ACLGAS"
BASE COUNT 236 a 450 c 414 g 270 t
ORIGIN
1 ctgcaggcgg ggcgctgtgc gcgccgcgat ccggtacgtg ggcctccggg ctgtcccctc
61 tgggggcggc gatcctccct ccggagcccc ccttcaaccc tcccggaagt gagcatttgc
121 aggaccaggg atgctgtgct gctctcccat gagccagtca ccgagtcggt ctgctgcagc
181 cctttctgaa cctctggccg tctggatgct ccactgtgct tgccaagatg aagtgcgcct
241 tggtggccac tgagggcgca gaggtcctct tctactggac agatcaggag tttgaagaga
301 gtctccggct gaagttcggg cagtcagaga atgaggaaga agagctccct gccctggagg
361 accagctcag caccctccta gccccggtca tcatctcctc catgacgatg ctggagaagc
421 tctcggacac ctacacctgc ttctccacgg aaaatggcaa cttcctgtat gtccttcacc
481 tgtttggaga atgcctgttc attgccatca atggtgacca caccgagagc gagggggacc
541 tgcggcggaa gctgtatgtg ctcaagtacc tgtttgaagt gcactttggg ctggtgactg
601 tggacggtca tcttatccga aaggagctgc ggcccccaga cctggcgcag cgtgtccagc
661 tgtgggagca cttccagagc ctgctgtgga cctacagccg cctgcgggag caggagcagt
721 gcttcgccgt ggaggccctg gagcgactga ttcaccccca gctctgtgag ctgtgcatag
781 aggcgctgga gcggcacgtc atccaggctg tcaacaccag ccccgagcgg ggaggcgagg
841 aggccctgca tgccttcctg ctcgtgcact ccaagctgct ggcattctac tctagccaca
901 gtgccagctc cctgcgcccg gccgacctgc ttgccctcat cctcctggtt caggacctct
961 accccagcga gagcacagca gaggacgaca ttcagccttc cccgcggagg gcccggagca
1021 gccagaacat ccccgtgcag caggcctgga gccctcactc cacgggccca actgggggga
1081 gctctgcaga gacggagaca gacagcttct ccctccctga ggagtacttc acaccagctc
1141 cttcccctgg cgatcagagc tcaggtagca ccatctggct ggaggggggc acccccccca
1201 tggatgccct tcaggtgagt ttctcctgtg cctgcctggg cgccagctga tctgagatgc
1261 cgcagtgagt attgggggct ctgagggttt cgcctccagg gtgactctac ccgtgccagc
1321 cctcctcctg cccaccccag ggctggtcag tgcaggtgcc tgtcctggtg
//