LOCUS AK295711 3081 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ54356 complete cds, highly similar to
DNA-repair protein complementing XP-C cells.
ACCESSION AK295711
VERSION AK295711.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3081)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3081
/clone="BRHIP3016216"
/clone_lib="BRHIP3"
/db_xref="H-InvDB:HIT000490335"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="hippocampus"
CDS 34..2745
/codon_start=1
/note="highly similar to DNA-repair protein complementing
XP-C cells"
/protein_id="BAG58555.1"
/transl_table=1
/translation="MARKRAAGGEPRGRELRSQKSKAKSKARREEEEEDAFEDEKPPK
KSLLSKVSQGKRKRGCSHPGGSADGPAKKKVAKVTVKSENLKVIKDEALSDGDDLRDF
PSDLKKAHHLKRGATMNEDSNEEEEESENDWEQAKTRERSEKIKLEFETYLRRAMKRF
NKGVHEDTHKVHLLCLLANGFYRNNICSQPDLHAIGLSIIPARFTRVLPRDVDTYYLS
NLVKWFIGTFTVNAELSASEQDNLQTTLERRFAIYSARDDEELVHIFLLILRALQLLT
RLVLSLQPIPLKSATAKGKKPSKERLTADPGGSSETSSQVLENHTKPKTSKGTKQEET
FAKGTCRPSAKGKRNKGGRKKRSKPSSSEEDEGPGDKQEKATQRRPHGRERRVASRVS
YKEESGSDEAGSGSDFELSSGEASDPSDEDSEPGPPKQRKAPAPQRTKAGSKSASRTH
RESHRKDPSLPAASSSSSSSKRGKKMCSDGEKAEKRSIAGIDQWLEVFCEQEEKWVCV
DCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRYDPVWMTVTRKCRVDAEWW
AETLRPYQSPFMDREKKEDLEFQAKHMDQPLPTAIGLYKNHPLYALKRHLLKYEAIYP
ETAAILGYCRGEAVYSRDCVHTLHSRDTWLKKARVVRLGEVPYKMVKGFSNRARKARL
AEPQLREENDLGLFGYWQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNLP
NLHRVARKLDIDCVQAITGFDFHGGYSHPVTDGYIVCEEFKDVLLTAWENEQAVIERK
EKEKKEKRALGNWKLLAKGLLIRERLKRRYGPKSEAAAPHTDAGGGLSSDEEEGTSSQ
AEAARILAASWPQNREDEEKQKLKGGPKKTKREKKAAASHLFPFEQL"
BASE COUNT 854 a 762 c 896 g 569 t
ORIGIN
1 actcgcgaag tggaatttgc ccagacaagc aacatggctc ggaaacgcgc ggccggcggg
61 gagccgcggg gacgcgaact gcgcagccag aaatccaagg ccaagagcaa ggcccggcgt
121 gaggaggagg aggaggatgc ctttgaagat gagaaacccc caaagaagag ccttctctcc
181 aaagtttcac aaggaaagag gaaaagaggc tgcagtcatc ctgggggttc agcagatggt
241 ccagcaaaaa agaaagtggc caaggtgact gttaaatctg aaaacctcaa ggttataaag
301 gatgaagccc tcagcgatgg ggatgacctc agggactttc caagtgacct caagaaggca
361 caccatctga agagaggggc taccatgaat gaagacagca atgaagaaga ggaagaaagt
421 gaaaatgatt gggagcaggc gaagacaaga gaaagaagtg aaaagataaa actggagttt
481 gagacatatc ttcggagggc gatgaaacgt ttcaataaag gggtccatga ggacacacac
541 aaggttcacc ttctctgcct gctagcaaat ggcttctatc gaaataacat ctgcagccag
601 ccagatctgc atgctattgg cctgtccatc atcccagccc gctttaccag agtgctgcct
661 cgagatgtgg acacctacta cctctcaaac ctggtgaagt ggttcattgg aacatttaca
721 gttaatgcag aactttcagc cagtgaacaa gataacctgc agactacatt ggaaaggaga
781 tttgctattt actctgctcg agatgatgag gaattggtcc atatattctt actgattctc
841 cgggctctgc agctcttgac ccggctggta ttgtctctac agccaattcc tctgaagtca
901 gcaacagcaa agggaaagaa accttccaag gaaagattga ctgcggatcc aggaggctcc
961 tcagaaactt ccagccaagt tctagaaaac cacaccaaac caaagaccag caaaggaacc
1021 aaacaagagg aaacctttgc taagggcacc tgcaggccaa gtgccaaagg gaagaggaac
1081 aagggaggca gaaagaaacg gagcaagccc tcctccagcg aggaagatga gggcccagga
1141 gacaagcagg agaaggcaac ccagcgacgt ccgcatggcc gggagcggcg ggtggcctcc
1201 agggtgtctt ataaagagga gagtgggagt gatgaggctg gcagcggctc tgattttgag
1261 ctctccagtg gagaagcctc tgatccctct gatgaggatt ccgaacctgg ccctccaaag
1321 cagaggaaag cccccgctcc tcagaggaca aaggctgggt ccaagagtgc ctccaggacc
1381 catcgtgaga gccatcgtaa ggacccaagc ttgccagcgg catcctcaag ctcttcaagc
1441 agtaaaagag gcaagaaaat gtgcagcgat ggtgagaagg cagaaaaaag aagcatagct
1501 ggtatagacc agtggctaga ggtgttctgt gagcaggagg aaaagtgggt atgtgtagac
1561 tgtgtgcacg gtgtggtggg ccagcctctg acctgttaca agtacgccac caagcccatg
1621 acctatgtgg tgggcattga cagtgacggc tgggtccgag atgtcacaca gaggtacgac
1681 ccagtctgga tgacagtgac ccgcaagtgc cgggttgatg ctgagtggtg ggccgagacc
1741 ttgagaccat accagagccc atttatggac agggagaaga aagaagactt ggagtttcag
1801 gcaaaacaca tggaccagcc tttgcccact gccattggct tatataagaa ccaccctctg
1861 tatgccctga agcggcatct cctgaaatat gaggccatct atcccgagac agctgccatc
1921 cttgggtatt gtcgtggaga agcggtctac tccagggatt gtgtgcacac tctgcattcc
1981 agggacacgt ggctgaagaa agcaagagtg gtgaggcttg gagaagtacc ctacaagatg
2041 gtgaaaggct tttctaaccg tgctcggaaa gcccgacttg ctgagcccca gctgcgggaa
2101 gaaaatgacc tgggcctgtt tggctactgg cagacagagg agtatcagcc cccagtggcc
2161 gtggacggga aggtgccccg gaacgagttt gggaatgtgt acctcttcct gcccagcatg
2221 atgcctattg gctgtgtcca gctgaacctg cccaatctac accgcgtggc ccgcaagctg
2281 gacatcgact gtgtccaggc catcactggc tttgatttcc atggcggcta ctcccatccc
2341 gtgactgatg gatacatcgt ctgcgaggaa ttcaaagacg tgctcctgac tgcctgggaa
2401 aatgagcagg cagtcattga aaggaaggag aaggagaaaa aggagaagcg ggctctaggg
2461 aactggaagt tgctggccaa aggtctgctc atcagggaga ggctgaagcg tcgctacggg
2521 cccaagagtg aggcagcagc tccccacaca gatgcaggag gtggactctc ttctgatgaa
2581 gaggagggga ccagctctca agcagaagcg gccaggatac tggctgcctc ctggcctcaa
2641 aaccgagaag atgaagaaaa gcagaagctg aagggtgggc ccaagaagac caaaagggaa
2701 aagaaagcag cagcttccca cctgttccca tttgagcagc tgtgagctga gcgcccacta
2761 gaggggcacc caccagttgc tgctgcccca ctacaggccc cacacctgcc ctgggcatgc
2821 ccagcccctg gtggtggggg cttctctgct gagaaggcaa actgaggcag catgcacgga
2881 ggcggggtca ggggagacga ggccaagctg aggaggtgct gcaggtcccg tctggctcca
2941 gcccttgtca gattcaccca gggtgaagcc ttcaaagctt tttgctacca aagcccactc
3001 accctttgag ctacagaaca ctttgctagg agatactctt ctgcctccta gacctgttct
3061 ttccatcttt agaaacatca g
//