LOCUS AK295660 3508 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ56087 complete cds, highly similar to Homo
sapiens SH3 multiple domains 1 (SH3MD1), mRNA.
ACCESSION AK295660
VERSION AK295660.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3508)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3508
/clone="BRHIP3007425"
/clone_lib="BRHIP3"
/db_xref="H-InvDB:HIT000490284"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="hippocampus"
CDS 166..3102
/codon_start=1
/note="highly similar to Homo sapiens SH3 multiple
domains 1 (SH3MD1), mRNA"
/protein_id="BAH12146.1"
/transl_table=1
/translation="MAVPRGNQLALGDSEVWLSSWAESPKKDVTGADATAEPMILEQY
VVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNGTRDD
SDINTSKTGEEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWA
PASYLKKAKDDLPTRKKNLAGPVEIIGNIMEISNLLNKKASGDKETPPAEGEGHEAPI
AKKEISLPILCNASNGSAVGVPDRTVSRLAQGSPAVARIAPQRAQISSPNLRTRPPPR
RESSLGFQLPKPPEPPSVEVEYYTIAEFQSCISDGISFRGGQKAEVIDKNSGGWWYVQ
IGEKEGWAPASYIDKRKKPNLSRRTSTLTRPKVPPPAPPSKPKEAEEGPTGASESQDS
PRKLKYEEPEYDIPAFGFDSEPELSEEPVEDRASGERRPAQPHRPSPASSLQRARFKV
GESSEDVALEEETIYENEGFRPYAEDTLSARGSSGDSDSPGSSSLSLTRKNSPKSGSP
KSSSLLKLKAEKNAQAEMGKNHSSASFSSSITINTTCCSSSSSSSSSLSKTSGDLKPR
SASDAGIRGTPKVRAKKDADANAGLTSCPRAKPSVRPKPFLNRAESQSQEKMDISTLR
RQLRPTGQLRGGLKGSKSEDSELPPQTASEAPSEGSRRSSSDLITLPATTPPCPTKKE
WEGPATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLV
LDENEQPDPSGKELDTVPAKGRQNEGKSDSLEKIERRVQALNTVNQSKKATPPIPSKP
PGGFGKTSGTPAVKMRNGVRQVAVRPQSVFVSPPPKDNNLSCALRRNESLTATDGLRG
VRRNSSFSTARSAAAEAKGRLAERAASQGSDSPLLPAQRNSIPVSPVRPKPIEKSQFI
HNNLKDVYVSIADYEGDEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSN
YLEKKN"
BASE COUNT 802 a 1065 c 1075 g 566 t
ORIGIN
1 gtgcgtgcgg ctgcggagcg cgcggctagc cggccgtggg catcacatga gcagcggcac
61 cggggaccga ccgcagccag cccgagggcg cccctgcagc tgcagccccg cgctcgcgcc
121 cggccctaac catgtctatc tgttgttgct tctttttcag ggactatggc agttccaagg
181 ggaaatcagc ttgctctcgg ggactcggaa gtgtggctgt ccagctgggc tgagtcgccc
241 aagaaggacg tgacaggtgc cgacgccacc gccgagccca tgatcctgga acagtacgtg
301 gtggtgtcca actataagaa gcaggagaac tcggagctga gcctccaggc cggggaggtg
361 gtggatgtca tcgagaagaa cgagagcggc tggtggttcg tgagcacttc tgaggagcag
421 ggctgggtcc ctgccaccta cctggaggcc cagaatggta ctcgggatga ctccgacatc
481 aacacctcta agactggaga agaggagaag tatgtcaccg tgcagcctta caccagccaa
541 agcaaggacg agattggctt tgagaagggc gtcacagtgg aggtgatccg gaagaatctg
601 gaaggctggt ggtatatcag atacctgggc aaagagggct gggcgccagc atcctacctg
661 aagaaggcca aggatgacct gccaacccgg aagaagaacc tggccggccc agtggagatc
721 attgggaaca tcatggagat cagcaacctg ctgaacaaga aggcgtctgg ggacaaggaa
781 actccaccag ccgaaggcga gggccatgag gcccccattg ccaagaagga gatcagcctg
841 cccatcctct gcaatgcctc caatggcagt gccgtgggcg ttcctgacag gactgtctcc
901 aggctggccc agggctctcc agctgtggcc aggattgccc ctcagcgggc ccagatcagc
961 tccccgaacc tacggacaag acctccacca cgcagagaat ccagcctggg gttccaactg
1021 ccaaagccac cagagccccc ttctgttgag gtggagtact acaccattgc cgaattccag
1081 tcgtgcattt ccgatggcat cagctttcgg ggtggacaga aggcagaggt cattgataag
1141 aactcaggtg gctggtggta cgtgcagatc ggtgagaagg agggctgggc ccccgcatca
1201 tacatcgata agcgcaagaa gcccaacctg agccgccgca caagcacgct gacccggccc
1261 aaggtgcccc cgccagcacc ccccagcaag cccaaggagg ccgaggaggg ccctacgggg
1321 gccagtgaga gccaggactc cccgcggaag ctcaagtatg aggagcctga gtatgacatc
1381 cctgcattcg gctttgactc agagcctgag ctgagcgagg agcccgtgga ggacagagcc
1441 tcaggggaga ggcggcctgc ccagccccac cggccctcgc cggcctcttc tctgcagcgg
1501 gcccgcttca aggtgggtga gtcttcagag gatgtggccc tggaagagga gaccatctat
1561 gagaatgagg gcttccggcc atatgcagag gacaccctgt cagccagagg ctcctccggg
1621 gacagcgact ccccaggcag ctcctcgctg tccctgacca ggaaaaactc ccccaaatca
1681 ggctccccca agtcatcatc actcctaaag ctcaaggcag agaagaatgc ccaggcagaa
1741 atggggaaga accactcctc agcctccttt tcctcatcca tcaccatcaa caccacttgc
1801 tgctcctcct cttcctcctc ctcctcttcc ttgtccaaaa ccagtggcga cctgaagccc
1861 cgctctgctt cggacgcagg catccgcggc actcccaagg tcagggcaaa gaaggatgct
1921 gatgcgaacg ctgggctgac ctcctgtccc cgggccaagc catcggtccg gcccaagcca
1981 ttcctaaacc gagcagagtc gcagagccaa gagaagatgg acatcagcac tttacggcgc
2041 cagctgagac ccacaggcca gctccgtgga gggctcaagg gctccaagag tgaggattcg
2101 gagctgcccc cgcagacggc ctccgaggct cccagtgagg ggtctaggag aagctcatcc
2161 gacctcatca ccctcccagc caccactccc ccatgtccca ccaagaagga atgggaaggg
2221 ccagccacct cgtacatgac atgcagcgcc taccagaagg tccaggactc ggagatcagc
2281 ttccccgcgg gcgtggaggt gcaggtgctg gagaagcagg agagcgggtg gtggtatgtg
2341 aggtttgggg agctggaggg ctgggcccct tcccactatt tggtgctgga tgagaacgag
2401 caacctgacc cctctggcaa agagctggac acagtgcccg ccaagggcag gcagaacgaa
2461 ggcaagtcag acagcctgga gaagatcgag aggcgcgtcc aagcactgaa caccgtcaac
2521 cagagcaaga aggccacgcc ccccatcccc tccaaacctc ccgggggctt tggcaagacc
2581 tcaggcactc cagcggtgaa gatgaggaac ggagtgcggc aggtggcggt caggccccag
2641 tcggtgtttg tgtccccgcc acccaaggac aacaacctgt cctgcgccct gcggaggaat
2701 gagtcactca cggccactga tggcctccga ggcgtccgac ggaactcctc ctttagcact
2761 gctcgctccg ctgccgccga ggccaagggc cgcctggccg aacgggctgc cagccagggt
2821 tcagactcac ccctactgcc cgcccagcgc aacagcatcc ccgtgtcccc tgtgcgcccc
2881 aagcccatcg agaagtctca gttcatccac aataacctca aagatgtgta cgtctctatc
2941 gcagactacg agggggatga ggagacagca ggcttccagg agggggtgtc catggaggtt
3001 ctggagagga accctaatgg ctggtggtac tgccagatcc tggatggtgt gaagcccttc
3061 aaaggctggg tgccttccaa ctaccttgag aaaaagaact agcagagggc ctgggctctt
3121 ccagcctcag tgtgcctctc tggccgccca ctggatgagc ggtgagacga acaaaaggga
3181 aaggaaaaaa tgggggtggg gggtgggggg tggacaacat tcaacactgc agaatgggtg
3241 acctcaaaga tgccccctgt ccaagccatc ccacagctgg aaggtagggg atgggggtgc
3301 ccacactgag tgaggaaggg aatggaccag ggagtcccag gcctgggacc cagagccaag
3361 aaagctgaga tatcctgtgc accataggga cttcaccaat ggattacatg ccatctggga
3421 caggccatgt gggagacccc agttgtgcct ttgctacaga tctggaaaag acaaggtcat
3481 gggggcctcc agtgtcctgc ccctgctt
//