LOCUS AK295619 4108 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ55460 complete cds, highly similar to
Semaphorin-5B precursor.
ACCESSION AK295619
VERSION AK295619.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4108)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..4108
/clone="BRHIP3002528"
/clone_lib="BRHIP3"
/db_xref="H-InvDB:HIT000490243"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="hippocampus"
CDS 12..3629
/codon_start=1
/note="highly similar to Semaphorin-5B precursor"
/protein_id="BAH12129.1"
/transl_table=1
/translation="MLHLSAEEAIGCVKVRRSFIDELAFGRGHSTGTGKQKRRDRVSG
SSWCLACVSWMPCGFSPSPVAHHLVPGPPDTPAQQLRCGWTVGGWLLSLVRGLLPCLP
PGARTAEGPIMVLAGPLAVSLLLPSLTLLVSHLSSSQDVSSEPSSEQQLCALSKHPTV
AFEDLQPWVSNFTYPGARDFSQLALDPSGNQLIVGARNYLFRLSLANVSLLQATEWAS
SEDTRRSCQSKGKTEEECQNYVRVLIVAGRKVFMCGTNAFSPMCTSRQVGNLSRTTEK
INGVARCPYDPRHNSTAVISSQGELYAATVIDFSGRDPAIYRSLGSGPPLRTAQYNSK
WLNEPNFVAAYDIGLFAYFFLRENAVEHDCGRTVYSRVARVCKNDVGGRFLLEDTWTT
FMKARLNCSRPGEVPFYYNELQSAFHLPEQDLIYGVFTTNVNSIAASAVCAFNLSAIS
QAFNGPFRYQENPRAAWLPIANPIPNFQCGTLPETGPNENLTERSLQDAQRLFLMSEA
VQPVTPEPCVTQDSVRFSHLVVDLVQAKDTLYHVLYIGTESGTILKALSTASRSLHGC
YLEELHVLPPGRREPLRSLRILHSARALFVGLRDGVLRVPLERCAAYRSQGACLGARD
PYCGWDGKQQRCSTLEDSSNMSLWTQNITACPVRNVTRDGGFGPWSPWQPCEHLDGDN
SGSCLCRARSCDSPRPRCGGLDCLGPAIHIANCSRNGAWTPWSSWALCSTSCGIGFQV
RQRSCSNPAPRHGGRICVGKSREERFCNENTPCPVPIFWASWGSWSKCSSNCGGGTQS
RRRACENGNSCLGCGVEFKTCNPEGCPEVRRNTPWTPWLPVNVTQGGARQEQRFRFTC
RAPLADPHGLQFGRRRTETRTCPADGSGSCDTDALVEDLLRSGSTSPHTVSGGWAAWG
PWSSCSRDCELGFRVRKRTCTNPEPRNGGLPCVGDAAEYQDCNPQACPVRGAWSCWTS
WSPCSASCGGGHYQRTRSCTSPAPSPGEDICLGLHTEEALCATQACPEGWSPWSEWSK
CTDDGAQSRSRHCEELLPGSSACAGNSSQSRPCPYSEIPVILPASSMEEATGCAGFNL
IHLVATGISCFLGSGLLTLAVYLSCQHCQRQSQESTLVHPATPNHLHYKGGGTPKNEK
YTPMEFKTLNKNNLIPDDRANFYPLQQTNVYTTTYYPSPLNKHSFRPEASPGQRCFPN
S"
BASE COUNT 771 a 1337 c 1216 g 784 t
ORIGIN
1 gtataaacca catgctgcat ctgtcagcag aggaagccat tggctgcgtg aaggtcagaa
61 ggagcttcat agatgagctg gcatttggga gagggcattc tacagggacg ggcaaacaga
121 agcgaaggga tcgagtgagt ggttccagct ggtgcctggc ctgtgtctct tggatgccct
181 gtggcttcag tccgtctcct gttgcccacc acctcgtccc tgggccgcct gataccccag
241 cccaacagct aaggtgtgga tggacagtag ggggctggct tctctcactg gtcaggggtc
301 ttctcccctg tctgcctccc ggagctagga ctgcagaggg gcctatcatg gtgcttgcag
361 gccccctggc tgtctcgctg ttgctgccca gcctcacact gctggtgtcc cacctctcca
421 gctcccagga tgtctccagt gagcccagca gtgagcagca gctgtgcgcc cttagcaagc
481 accccaccgt ggcctttgaa gacctgcagc cgtgggtctc taacttcacc taccctggag
541 cccgggattt ctcccagctg gctttggacc cctccgggaa ccagctcatc gtgggagcca
601 ggaactacct cttcagactc agccttgcca atgtctctct tcttcaggcc acagagtggg
661 cctccagtga ggacacgcgc cgctcctgcc aaagcaaagg gaagactgag gaggagtgtc
721 agaactacgt gcgagtcctg atcgtcgccg gccggaaggt gttcatgtgt ggaaccaatg
781 ccttttcccc catgtgcacc agcagacagg tggggaacct cagccggact actgagaaga
841 tcaatggtgt ggcccgctgc ccctatgacc cacgccacaa ctccacagct gtcatctcct
901 cccaggggga gctctatgca gccacagtca tcgacttctc aggtcgggac cctgccatct
961 accgcagcct gggcagtggg ccaccgcttc gcactgccca atataactcc aagtggctta
1021 atgagccaaa cttcgtggca gcctatgata ttgggctgtt tgcatacttc ttcctgcggg
1081 agaacgcagt ggagcacgac tgtggacgca ccgtgtactc tcgcgtggcc cgcgtgtgca
1141 agaatgacgt ggggggccga ttcctgctgg aggacacatg gaccacattc atgaaggccc
1201 ggctcaactg ctcccgcccg ggcgaggtcc ccttctacta taatgagctg cagagtgcct
1261 tccacttgcc agagcaggac ctcatctatg gagttttcac aaccaacgta aacagcatcg
1321 cggcttctgc tgtctgcgcc ttcaacctca gtgctatctc ccaggctttc aatggcccat
1381 ttcgctacca ggagaacccc agggctgcct ggctccccat agccaacccc atccccaatt
1441 tccagtgtgg caccctgcct gagaccggtc ccaacgagaa cctgacggag cgcagcctgc
1501 aggacgcgca gcgcctcttc ctgatgagcg aggccgtgca gccggtgaca cccgagccct
1561 gtgtcaccca ggacagcgtg cgcttctcac acctcgtggt ggacctggtg caggctaaag
1621 acacgctcta ccatgtactc tacattggca ccgagtcggg caccatcctg aaggcgctgt
1681 ccacggcgag ccgcagcctc cacggctgct acctggagga gctgcacgtg ctgccccccg
1741 ggcgccgcga gcccctgcgc agcctgcgca tcctgcacag cgcccgcgcg ctcttcgtgg
1801 ggctgagaga cggcgtcctg cgggtcccac tggagaggtg cgccgcctac cgcagccagg
1861 gggcatgcct gggggcccgg gacccgtact gtggctggga cgggaagcag caacgttgca
1921 gcacactcga ggacagctcc aacatgagcc tctggaccca gaacatcacc gcctgtcctg
1981 tgcggaatgt gacacgggat gggggcttcg gcccatggtc accatggcaa ccatgtgagc
2041 acttggatgg ggacaactca ggctcttgcc tgtgtcgagc tcgatcctgt gattcccctc
2101 gaccccgctg tgggggcctt gactgcctgg ggccagccat ccacatcgcc aactgctcca
2161 ggaatggggc gtggaccccg tggtcatcgt gggcgctgtg cagcacgtcc tgtggcatcg
2221 gcttccaggt ccgccagcga agttgcagca accctgctcc ccgccacggg ggccgcatct
2281 gcgtgggcaa gagccgggag gaacggttct gtaatgagaa cacgccttgc ccggtgccca
2341 tcttctgggc ttcctggggc tcctggagca agtgcagcag caactgtgga gggggcacgc
2401 agtcgcggcg tcgggcctgc gagaacggca actcctgcct gggctgcggc gtggagttca
2461 agacgtgcaa ccccgagggc tgccccgaag tgcggcgcaa caccccctgg acgccgtggc
2521 tgcccgtgaa cgtgacgcag ggcggggcac ggcaggagca gcggttccgc ttcacctgcc
2581 gcgcgcccct tgcagacccg cacggcctgc agttcggcag gagaaggacc gagacgagga
2641 cctgtcccgc ggacggctcc ggctcctgcg acaccgacgc cctggtggag gacctcctgc
2701 gcagcgggag cacctccccg cacacggtga gcgggggctg ggccgcctgg ggcccgtggt
2761 cgtcctgctc ccgggactgc gagctgggct tccgcgtccg caagagaacg tgcactaacc
2821 cggagccccg caacgggggc ctgccctgcg tgggcgatgc tgccgagtac caggactgca
2881 acccccaggc ttgcccagtt cggggtgctt ggtcctgctg gacctcatgg tctccatgct
2941 cagcttcctg tggtgggggt cactatcaac gcacccgttc ctgcaccagc cccgcaccct
3001 ccccaggtga ggacatctgt ctcgggctgc acacggagga ggcactatgt gccacacagg
3061 cctgcccaga aggctggtcg ccctggtctg agtggagtaa gtgcactgac gacggagccc
3121 agagccgaag ccggcactgt gaggagctcc tcccagggtc cagcgcctgt gctggaaaca
3181 gcagccagag ccgcccctgc ccctacagcg agattcccgt catcctgcca gcctccagca
3241 tggaggaggc caccggctgt gcagggttca atctcatcca cttggtggcc acgggcatct
3301 cctgcttctt gggctctggg ctcctgaccc tagcagtgta cctgtcttgc cagcactgcc
3361 agcgtcagtc ccaggagtcc acactggtcc atcctgccac ccccaaccat ttgcactaca
3421 agggcggagg caccccgaag aatgaaaagt acacacccat ggaattcaag accctgaaca
3481 agaataactt gatccctgat gacagagcca acttctaccc attgcagcag accaatgtgt
3541 acacgactac ttactaccca agccccctga acaaacacag cttccggccc gaggcctcac
3601 ctggacaacg gtgcttcccc aacagctgat accgccgtcc tggggacttg ggcttcttgc
3661 cttcataagg cacagagcag atggagatgg gacagtggag ccagtttggt tttctccctc
3721 tgcactaggc caagaacttg ctgccttgcc tgtggggggt cccatctggc ttcagagagc
3781 tctggctggc attgaccatg ggggaaaggg ctggtttcag gctgacatat ggccgcaggt
3841 ccagttcagc ccaggtctct catggttatc ttccaaccca ctgtcacgct gacactatgc
3901 tgccatgcct gggctgtgga cctactgggc atttgaggaa ttggagaatg gagatggcaa
3961 gagggcaggc ttttaagttt gggttggaga caacttcctg tggcccccac aagctgagtc
4021 tggccttctc cagctggccc caaaaaaggc ctttgctaca tcctgattat ctctgaaagt
4081 aatcaatcaa gtggctccag tagctctg
//