LOCUS AK295518 2191 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ58183 complete cds, highly similar to
Junctophilin-3.
ACCESSION AK295518
VERSION AK295518.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2191)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2191
/clone="BRHIP2011911"
/clone_lib="BRHIP2"
/db_xref="H-InvDB:HIT000490142"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="hippocampus"
CDS 126..1961
/codon_start=1
/note="highly similar to Junctophilin-3"
/protein_id="BAG58433.1"
/transl_table=1
/translation="MRQGYGVRQSVPYGMAAVIRSPLRTSINSLRSEHTNGTALHPDA
SPAVAGSPAVSRGGFVLVAHSDSEILKSKKKGLFRRSLLSGLKLRKSESKSSLASQRS
KQSSFRSEAGMSTVSSTASDIHSTISLGEAEAELAVIEDDIDATTTETYVGEWKNDKR
SGFGVSQRSDGLKYEGEWASNRRHGYGCMTFPDGTKEEGKYKQNILVGGKRKNLIPLR
ASKIREKVDRAVEAAERAATIAKQKAEIAASRTSHSRAKAEAALTAAQKAQEEARIAR
ITAKEFSPSFQHRENGLEYQRPKRQTSCDDIEVLSTGTPLQQESPELYRKGTTPSDLT
PDDSPLQSFPTSPAATPPPAPAARNKVAHFSRQVSVDEERGGDIQMLLEGRAGDCARS
SWGEEQAGGSRGVRSGALRGGLLVDDFRTRGSGRKQPGNPKPRERRTESPPVFTWTSH
HRASNHSPGGSRLLELQEEKLSNYRMEMKPLLRMETHPQKRRYSKGGACRGLGDDHRP
EDRGFGVQRLRSKAQNKENFRPASSAEPAVQKLASLRLGGAEPRLLRWDLTFSPPQKS
LPVALESDEENGDELKSSTGSAPILVVMVILLNIGVAILFINFFI"
BASE COUNT 460 a 719 c 705 g 307 t
ORIGIN
1 ggaattcggg tgactttgct ccaagataca cgcgtgtgtc ccgactctca ctcaatttat
61 aggggagagg gactcgccaa atccctgttt tctgggggac ctaccagggc cagtgggtcg
121 gtggcatgcg ccagggctac ggcgtccggc agagcgtccc gtatggcatg gccgcggtca
181 tccgctcacc cctgaggacg tccatcaact ccctgcgcag cgagcacacc aacggcacgg
241 cgctgcatcc cgacgcctct ccggcggtgg ccggcagccc ggccgtgtcc cgcgggggct
301 tcgtgctcgt ggcccacagt gactccgaga tcctcaagag caagaagaag gggctgtttc
361 ggcgctcgct gctgagcggg ctgaagctgc gcaagtcaga gtccaagagc agcctggcca
421 gccaacgcag caagcagagc tcctttcgca gcgaggcggg catgagcacc gtcagctcca
481 cggccagcga catccactcc accatcagcc tgggcgaggc tgaggccgag ctggcggtca
541 tcgaggacga catcgacgcc accaccaccg agacctacgt gggcgagtgg aagaacgaca
601 aacgctccgg cttcggcgtg agccagcgct cggacgggct caagtacgag ggcgagtggg
661 ccagcaaccg gcgccatggc tacggctgca tgaccttccc ggacggcacc aaggaggagg
721 gcaagtacaa gcagaacatc ctcgtcggcg gcaagcgcaa gaacctcatc cccctgcggg
781 ccagcaagat ccgcgagaag gtggaccgcg ccgttgaggc cgctgagcgg gccgccacca
841 tcgccaagca gaaggctgag atcgcggctt ccaggacctc ccactctcgg gcaaaggccg
901 aggcagccct cacagcagct cagaaagccc aggaggaggc gcggatcgcc aggatcactg
961 ccaaagagtt ctccccttcc ttccagcacc gggaaaacgg gctggagtac cagaggccga
1021 agcgtcagac ctcctgtgac gacatcgagg tgctgtccac cgggacaccc ctgcagcagg
1081 agagccccga gctgtaccgc aagggcacca ctccctccga cctgaccccc gacgacagcc
1141 ccctgcagag cttccccacc agccccgcgg ccaccccgcc gcccgcgccc gccgccagga
1201 acaaggtcgc ccacttctcg aggcaggtgt cggtggacga ggagcggggc ggggacatcc
1261 agatgctcct ggagggccgg gccggggact gcgcccgcag cagctggggc gaggagcagg
1321 ccgggggctc caggggtgtc cgcagcggtg ccctgcgcgg cggcctgctc gtggatgact
1381 tccgcacccg aggttcgggc cgcaagcagc ccgggaaccc caagccgcgg gagcggcgga
1441 cggagtcacc ccccgtgttc acgtggactt cccaccaccg ggccagcaac cacagccccg
1501 gaggctccag gctgctggag ctgcaggagg agaagctgag caactaccgg atggagatga
1561 aacccttgct gaggatggag acgcatcccc agaaaagacg ctacagcaag ggcggcgcct
1621 gccggggctt gggggacgac caccgccccg aggaccgggg cttcggggtg cagagactgc
1681 ggtccaaggc ccagaacaag gagaacttca ggccggcctc ctccgcggag cccgccgtgc
1741 agaaactggc gagcctgcgg ctgggcgggg ccgagccccg gttgctgcgt tgggacttga
1801 ccttctcccc gccccagaaa tccttgcctg tcgctctaga gtccgacgag gagaatgggg
1861 atgagctcaa gtccagtacg ggctcagcgc ctatcctggt ggtcatggtg atcttgctca
1921 acatcggagt cgccattctg tttattaact ttttcatctg atgagatgtc gcggtagcaa
1981 aaatagagaa agggtagaaa aaagggacat taaaattaaa agcaaaacca caagaaggga
2041 aagaccgcaa ctcggacagc ccagcgactt ccaagtcctc tcacagaaga accacacgat
2101 tggggtcgct ccatcaccca aacaaaagaa caaggtttgc caggatgtcc gagtgccccc
2161 tggccctggc tctcgtgtgc atggacgtgc c
//